Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0545 ATGGAAGATTCTGAACCCAAATCCGCCGAAAACAACCAACAAACTGAACAAGTTTGTAGTTTTTTCCGAAAACCGGTTAATAAGAAGAACATAAGGAAGCGAACTATTGATAATGAAGATAATGAGGATGATTCCAATAATGAAGAATCTTTGATGCATGTTCAGAAAAAGAATACAAAGACTGATAATAAGCTGTTCTTTTCCTCCGGGTCTTCCAAAAGCTCTGCATCGACTGAACGGAACGAAGAATCTGAGAAAAAACATGGCTTTCATTTTGAGTCATCCAAAGAGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGATTTTTCGAATGATGCTCGTGCTAGGCGTGAAAGAGCTCTTAAGCAAGCGTCGGAGACTCTTAAGGGAAAGGGAACTGGCTCCGAGGATGGAAAATTATACAAGGGAATGAATAATTACACAGATCATAAGGCTGGATTTCGGAGAGAGCACACAATTTCTGGTGAAAAGGCTGGTGGGTCACACGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTGTCGGCTAGGTTTGATTATCAGCCTGATATATGTAAAGATTATAAGGAGACTGGGTATTGTGGTTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGAGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAACAAAGGAGGATGCGTTTGGCTGCAGGTGAGGATGCGGAAGAGGAGGGTGCCAATTTGAATGATGATGAAGATGACGACGACGATGATGCATTACCATTTGCGTGTTTCATTTGTAGAAATCCATTCGTGGATCCTGTCTCAACGAAGTGCAAACACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTTTGCAACCAGCCAACGCTTGGTATTTTTAACGTTGCTCATGAGATACGGAAGAAGATGGCTGAGGATAAATAA 996 0.4167 MEDSEPKSAENNQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEDDSNNEESLMHVQKKNTKTDNKLFFSSGSSKSSASTERNEESEKKHGFHFESSKEIQVQHDSKATATLETETDFSNDARARRERALKQASETLKGKGTGSEDGKLYKGMNNYTDHKAGFRREHTISGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKQRRMRLAAGEDAEEEGANLNDDEDDDDDDALPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0545 331 Pfam Zinc finger, C3HC4 type (RING finger) 271 313 - -
Tpr2g0545 331 PANTHER ZINC FINGER PROTEIN 183 10 330 IPR039971 -
Tpr2g0545 331 MobiDBLite consensus disorder prediction 101 115 - -
Tpr2g0545 331 CDD RING-HC_RNF113A_B 270 310 - -
Tpr2g0545 331 MobiDBLite consensus disorder prediction 1 121 - -
Tpr2g0545 331 ProSiteProfiles Zinc finger RING-type profile. 272 310 IPR001841 -
Tpr2g0545 331 SUPERFAMILY RING/U-box 271 314 - -
Tpr2g0545 331 MobiDBLite consensus disorder prediction 242 261 - -
Tpr2g0545 331 MobiDBLite consensus disorder prediction 78 100 - -
Tpr2g0545 331 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Tpr2g0545 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Tpr2g0545 331 SMART ring_2 272 309 IPR001841 -
Tpr2g0545 331 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Tpr2g0545 331 Gene3D - 190 224 - -
Tpr2g0545 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 329 IPR013083 -
Tpr2g0545 331 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Tpr2g0545 331 MobiDBLite consensus disorder prediction 61 77 - -
Tpr2g0545 331 ProSitePatterns Zinc finger RING-type signature. 287 296 IPR017907 -
Tpr2g0545 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0545 Tpr-Chr2 6127898 6129753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0545 2 331 C2H2 Transcription Factor Family AT1G01350 68.485 9.76e-164 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr2g0545 zf-C3HC4_3 3.4e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0545 K13127 - gmx:100817146 521.931