Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0482 ATGGAGTCTGGTCGTCTTTACTTTGATAGTTCTAGTTGTCGTGGTAACAACAACATGAATATGCTCTTTCTTGGGAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAGCAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTTCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAGACTCAATTGGCCAAGAAGCTAGGGTTGCAGCCTAGACAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAATCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTATCAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCCAGCTAAAGATATGCCTGAAGAACCTTTATTATCAGAAAAGAAAGCTGATCCACTTCAAGTGGACATAGCTCAAATTTTCAGCATAAAGGTGGATGACCACATGAGTTCTGGAAGTGTTGGAAGTGCGGTGGTGGACGAGGGTAGTCCTCATGTCGTTGTTGACAGTGTTGATTCATACTTTCCAGCTGACAACTATGGTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGAAGTGATGATGGGAGGTGTTACTTTGATGTGTTTGTTGCATCTGAAACAACTGAGCAACAAAACCATGAAGGGGGAGAAGGATTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 864 0.4317 MESGRLYFDSSSCRGNNNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIIKENEKLKSEVVSLNEKLQVPAKDMPEEPLLSEKKADPLQVDIAQIFSIKVDDHMSSGSVGSAVVDEGSPHVVVDSVDSYFPADNYGGCVAPIERVQSEEDDGSDDGRCYFDVFVASETTEQQNHEGGEGLNWWGNMYYVA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0482 287 CDD homeodomain 68 124 IPR001356 GO:0003677
Tpr2g0482 287 Gene3D - 61 130 - -
Tpr2g0482 287 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Tpr2g0482 287 SMART HOX_1 66 127 IPR001356 GO:0003677
Tpr2g0482 287 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Tpr2g0482 287 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Tpr2g0482 287 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Tpr2g0482 287 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Tpr2g0482 287 Coils Coil 136 163 - -
Tpr2g0482 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 259 IPR045224 GO:0003700
Tpr2g0482 287 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Tpr2g0482 287 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Tpr2g0482 287 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0482 Tpr-Chr2 5594338 5597641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0482 1 281 Homeobox Transcription Factor Family AT3G01470 57.692 8.11e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g0482 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0482 K09338 - gmx:100797836 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0482 2 5594338 5597641 Tpr2g0482 2 5594338 5597641 ECH