Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0478 ATGGAAGCCTTTCAGAATGGCTTTTTGGTAATTATAATTTTTTACACTAATTGTGGAATCAAGATTACACGCAGTCATAAAGTGTCTGCAGTTGTGCAGTCAGACGTTCCTGATTTAAGCAAGAACAAGGTGCTTTCATGGATAAAGAGGCTAGAAATTGCAATCGATAGCGCTCGAGGTCTTTGGTTTTTGCACACATATCAAGGAGGCTGTATAGTTCACCGTGACATTAAGCCAACAAATATCCTTTTAGGGTCAAAATTTGAGGCAAAGCTATCAGATTTTGGATTGTCTAAAATTATTGAGATAGGTGAAACATATGTTAGTTCAGAAGTGAGAGGAACTTTTGGATATGTGGATCCTGAGTACCAAAGCAATCACCATGTGAATTCATCTGGTGATGTTTATAGTTTTGGCATGGTACTTCTACAAATTATTTCTGGAAAGAGGGTCATAAATTTGAAATTAAAGAGACCAATGTCACTTAGTAAAATGGCAAAAGCTTTCACTAGGAATGGTAGCATTACAGAATTTGCTGATCCTAGACTTGAAGGAAATTATTGTGAAGAAGCATTTGATTTTACACTTCAATTGGCTCTATCATGCACATCCCTTAACCAACAAAGACCATCCATGGAACGATGTAACTGGAATGTTTATGGGCAATTGCATGTCTGGAAAATGCAGGATGTTGGTTGA 699 0.3705 MEAFQNGFLVIIIFYTNCGIKITRSHKVSAVVQSDVPDLSKNKVLSWIKRLEIAIDSARGLWFLHTYQGGCIVHRDIKPTNILLGSKFEAKLSDFGLSKIIEIGETYVSSEVRGTFGYVDPEYQSNHHVNSSGDVYSFGMVLLQIISGKRVINLKLKRPMSLSKMAKAFTRNGSITEFADPRLEGNYCEEAFDFTLQLALSCTSLNQQRPSMERCNWNVYGQLHVWKMQDVG* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0478 232 SMART serkin_6 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g0478 232 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g0478 232 Gene3D Transferase(Phosphotransferase) domain 1 34 225 - -
Tpr2g0478 232 PANTHER OS01G0253100 PROTEIN 42 216 IPR045271 GO:0004714|GO:0006468
Tpr2g0478 232 Pfam Protein kinase domain 44 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g0478 232 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Tpr2g0478 232 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 42 216 - -
Tpr2g0478 232 SUPERFAMILY Protein kinase-like (PK-like) 38 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0478 Tpr-Chr2 5556292 5560086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0478 1 225 Receptor kinase-like Gene Family AT2G39360 36.522 3.88e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Tpr2g0478 Pkinase 7.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0478 - - mtr:MTR_6g007690 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0478 2 5556292 5560086 Tpr2g0478 2 5556292 5560086 ECH