Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0473 ATGTCAGAAACTATGTATCCTAAGTTGTTATTTGAACATACCCATTTGAGAATGTCTTTGATTAATCATCAAATCTATCAAAAAGATGGTTACTTTATGAATTTTCCACCACCACCATCACCATCATCACTATCATCACCAACACAATCTTCATCAAGTTCTTCAACAACACCAACACAACCATCTTCATCTTCTAGTACTAAAATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCAGTTCTGTTCTTCATATCTGGTTTACTTCATTTGCTTGTTAGATTTCTTATAAAGAATCCATCTTCATCTAATTCTACATCTAATAGACAACACCATAATGAAATTTCAACTTCTGATGCACTTCAAAGACAGTTACAACAGCTTTTTCATTTACATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTACCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTACTGAGAAAGATAAGTTAAGATTGTTACCTATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTCATGGATTTTCGATAGAAAATCCGATATTCGATTTCGATGATATTAGAGAAGATGGCGAGTTTCCTTGTAATGGAGAGAATGGATTTGGTAATAGACAAAAAGAAATTGTAGTTGATGAAGTTGTCGATAAAGGGGTTTTGCCAGTTCGACTGGGGAAATTCAAGAAGATGAATGCGGAAGTTGGTAGAGAGAACGAAGAAGTAGGTGAAACGAGTAGTAGTAATTTGGATGCAAGAAGATGTTTTTCAATGGGATCTTATCAATATGTGGTTGGGAATTCGGAGTTAAGGGTAGCCTTAAGTCATGATAGTAGAACTCATAACGATGATATAAGGGTTAACAAAGGAATGGAAAATGTTAAGAATCTTTGTGTAGAGAGTGATTTGGAAGCAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCGATTTCTAAGATTTGGTTGTGGCCAAGGAAAGGAAAATTTTCTTCGAGTTCTTTAGAAGCTCATAATGGGATGGCATTGCCATCTTATCTTAACAAAGATTTGCAGCATCATGGAATGAGGGAAACAGATGGTGTATGA 1197 0.3475 MSETMYPKLLFEHTHLRMSLINHQIYQKDGYFMNFPPPPSPSSLSSPTQSSSSSSTTPTQPSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKNPSSSNSTSNRQHHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFTEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLQTHGFSIENPIFDFDDIREDGEFPCNGENGFGNRQKEIVVDEVVDKGVLPVRLGKFKKMNAEVGRENEEVGETSSSNLDARRCFSMGSYQYVVGNSELRVALSHDSRTHNDDIRVNKGMENVKNLCVESDLEAKKISNVSKGESFSISKIWLWPRKGKFSSSSLEAHNGMALPSYLNKDLQHHGMRETDGV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0473 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 211 IPR013083 -
Tpr2g0473 398 MobiDBLite consensus disorder prediction 39 63 - -
Tpr2g0473 398 MobiDBLite consensus disorder prediction 45 63 - -
Tpr2g0473 398 Pfam Ring finger domain 161 204 IPR001841 -
Tpr2g0473 398 SMART ring_2 162 203 IPR001841 -
Tpr2g0473 398 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Tpr2g0473 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 372 - -
Tpr2g0473 398 CDD RING-H2_PA-TM-RING 161 204 - -
Tpr2g0473 398 SUPERFAMILY RING/U-box 141 209 - -
Tpr2g0473 398 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 45 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0473 Tpr-Chr2 5496806 5500589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0473 63 370 C3H Transcription Factor Family AT2G18650 41.176 7.49e-57 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0473 2 5496806 5500589 Tpr2g0473 2 5496806 5500589 ECH