Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0458 ATGGGAAATAAAAGGACAAAGACAAATGGGGCAGGTCCATCTACAAGTAGCAAATATCTTTCTGAGAAGGAAAATTATTTATCTGTCAATGCCGATTTGGCCAATATGCCTAAAAAGTCATCTTCTTCGAATAAGCCAAAGCCAAAACCTGCTCCAAAAGCTTCTACATACATTGATCATAATGATCTTCCTACCTCTGATGATGATGATGATGATTCCGAAGAGGAGTTAGAGCAAAAGCATAGGCCTGATGTGAAGCCTCTTGACTTGTCTATTTCTGACAAAGAGTTGAAAAAGCGTGAAAAGAACGATATTTTAGCTGCCCATCGGGCTGAACAGGCAAAGAAAGAAGCTCTTAACGATGATCGTGATGCTTTCACTGTTGTCATTGGAAGTCGGACCTCGGTGCTTGATGGAGATGATGACACTGATGCTAATGTCAAAGATATAACAATACAAAATTTTTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAAAATGCATCAGTGACGATATCTCATGGAAAGCGATATGGTTTGGTTGGACCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGGGATGATAAAACAGCACTTGAAGCCGTCGTTTCAGCCAATGCAGAACTTGTTAAAGTTCGACAAGAAGTTGCAGATTTACAGAATGCAACTTCTGTCAAAGAGGGTGTGGATGAAGATGATGATACTAATGAGGATGAGGATGTCGGAGAAAAGCTCGCAGAGCTGTATGAAAAATTACAACTGATGGGGTCTGATGCCGCTGAACCTCAAGCATCTAAGATTTTAGCTGGTCTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGTGGTGGGTGGAGGATGAGAATTTCATTAGCTCGAGCACTTTTCGTTCAGCCCACTTTATTATTGCTCGATGAACCCACTAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTACCTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCGCACGACAGAGATTTCCTCAATACTGTATGCTCTGAAATTATTCACTTGCATGATTTGAAACTTCAACCCTATGTTGGAGATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAGATGAATAAGAAGTATCAGATTTATAACAAGCAATTGAAAGCAGCTAGAAGGACTGGAAACAAGGCTCAACAAGATAAGGTGAAGGATCGAGCTAAGTTTGCAGCTGCAAAGGAAGCATCAAAAAGCAAAAGTAAGGGAAAGGGTAATGAGGATGAGGCCCAAGTAGAGGTACCACAGAAGTGGAGAGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTCAGCTCACACCTCCACTTCTGAAGGTTGAAAATGTGAGCTTCGTCTATCCAAACCGAGAGGATTTCAGACTCTCGGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCCGGAAAATCTACACTGCTAAATCTTCTAGCCGGTGATTTGCATGAAACAGAAGGTCATATTCATAGGAGTCAGAAGTTGAGAATAGGGAGATACTCCCAACATTTTGTGGACCAACTGACAATGGACGAAACACCTGTTCAGTACCTCCTTCGCCTCTGCCCAGACTATAAGGGAGCTGGACTTAGCAAGGCGGAGGATGTCCATGAACAACTTGGCAAATTTGGGCTACCTAGTCATAATCGTAAAACCCCCATTGTCAAACTATCAGGTGGGCAGAAATCTCGAGTCGTTTTCACATCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCCACGAATCATCTGGATATGGAAAGTATTGATGCATTGGCCGATGCGCTGGTTAAATTCAAAGGTGGAGTTATTCTTGTTAGTCACGATTCTAGATTGATATCACAGGTCTGTGCTGATGAAGAAAAGAGTCAAATTTGGGTTGTTGAGGATGGCATTGTCAGAATTTTCCCCGGAACATTTGAAGATTACAAGGAAGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA 2142 0.4234 MGNKRTKTNGAGPSTSSKYLSEKENYLSVNADLANMPKKSSSSNKPKPKPAPKASTYIDHNDLPTSDDDDDDSEEELEQKHRPDVKPLDLSISDKELKKREKNDILAAHRAEQAKKEALNDDRDAFTVVIGSRTSVLDGDDDTDANVKDITIQNFSVSARGKELLKNASVTISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANAELVKVRQEVADLQNATSVKEGVDEDDDTNEDEDVGEKLAELYEKLQLMGSDAAEPQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLQPYVGDFDAFESGYEQRRREMNKKYQIYNKQLKAARRTGNKAQQDKVKDRAKFAAAKEASKSKSKGKGNEDEAQVEVPQKWRDYSVEFHFPEPTQLTPPLLKVENVSFVYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLHETEGHIHRSQKLRIGRYSQHFVDQLTMDETPVQYLLRLCPDYKGAGLSKAEDVHEQLGKFGLPSHNRKTPIVKLSGGQKSRVVFTSISMSKPHILLLDEPTNHLDMESIDALADALVKFKGGVILVSHDSRLISQVCADEEKSQIWVVEDGIVRIFPGTFEDYKEDLLKEIKAEVDD* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0458 713 MobiDBLite consensus disorder prediction 34 49 - -
Tpr2g0458 713 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 27 713 - -
Tpr2g0458 713 Coils Coil 226 246 - -
Tpr2g0458 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 698 IPR027417 -
Tpr2g0458 713 Gene3D - 147 433 IPR027417 -
Tpr2g0458 713 Gene3D - 447 712 IPR027417 -
Tpr2g0458 713 PANTHER - 27 713 - -
Tpr2g0458 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 395 IPR027417 -
Tpr2g0458 713 Coils Coil 700 713 - -
Tpr2g0458 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 405 IPR003439 GO:0005524
Tpr2g0458 713 MobiDBLite consensus disorder prediction 76 95 - -
Tpr2g0458 713 MobiDBLite consensus disorder prediction 1 24 - -
Tpr2g0458 713 CDD ABCF_EF-3 150 382 - -
Tpr2g0458 713 Coils Coil 401 421 - -
Tpr2g0458 713 MobiDBLite consensus disorder prediction 1 95 - -
Tpr2g0458 713 Pfam ABC transporter 165 337 IPR003439 GO:0005524
Tpr2g0458 713 Pfam ABC transporter 501 638 IPR003439 GO:0005524
Tpr2g0458 713 SMART AAA_5 510 702 IPR003593 -
Tpr2g0458 713 SMART AAA_5 174 381 IPR003593 -
Tpr2g0458 713 CDD ABCF_EF-3 484 687 - -
Tpr2g0458 713 ProSitePatterns ABC transporters family signature. 309 323 IPR017871 GO:0005524
Tpr2g0458 713 MobiDBLite consensus disorder prediction 438 458 - -
Tpr2g0458 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 484 711 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0458 Tpr-Chr2 5371004 5373818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0458 483 664 Calmodulin-binding Proteins AT2G36910 28.986 5.89e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0458 K06184 - gmx:100806865 1043.49