Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0431 ATGGAGAATCACAAAAACACAAACAACAAATGGAGAAGTCCAAAAAAACAAACATCATTAGAACCAATCACAACAATAACACCAAAGATGAAATGGAAGAAGATGATGATTTTCTTCAACACAACAAAAACTACACAAAATCCACCTCACGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCCTCAGGTCATTCCTTTGACAGAATCTCCATTGAAGCTTGTAAAAATCTCAACTTTACCCCTCAACTTCAAGATGGAACCACCCCCAATTTCACAACCCTAATTCCCAATCTTAATCTCAAATCCTCAATTCTCAAATGGACCCAATCATCACAAACAAAAATTCAAACAAACCCAAATCTCAAAACAACTGAAAACCTCGTACAAACATTAATTTCCTCAAAAAAACATCAAAAGCATCAAAACGATGTCGTTTCAGAGAAAAACGACCAAGAAGAAGAAACACGACAAATCTCAATCTTAACACCACGAAAAACCTCGTACTCAAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCTTCAACAACACCACGACCTCAATTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAAATTGAACCTTCAACATCACCAGAAGAAGAAGAAATCGTAACAAAACTCAGAAACCCACAACATTTCATAATCGAAGAAGCATTAATCTCTCTCAGAAAAATCACAAGAACAAAAGAGGAAACAAGGGTTCAACTTTGCACGAACAGGGTACTATGTTCTTTGCGTACGTTAATTTTGTCGAAAACCGAGGTTGTAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCTCTTGAGAAAGTCAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTATTGAAGTTTGGATCGTGTGAATCACAGGAACACGCTTCTTGTGTGTTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCGTTACTTCACGCGCTTAAATCGGAGAGTGAGAGAACGCGCCATGATTCGGCTTTGGCGCTTTCTCATTTGTCTTTAGTGAGGAGTAATAGGGCCAAGATGGTTAAACTAGGTTTTGTTTCGGTTCTGTTGGGGATGGTTAAGTCGGGTCATATGATGGGTCAGGTTTTGTTGATTTTGGGTAATTTGGGATTCGGGTCGGATGGTCGGGCTGCTATGCTAGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGGGTGGGGTCGAGTTGGATTCTGAGTCAATTCGGGAGAGTTGTGTTGGCGTTTTGTATGCATTGAGTCACGGGGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGATTGGGGTTGTCGAAATGTTGGAAAAGATGGAGAAAATGAAGAGTGAGAAGGCTAACGAGAAGGTGAGGCGGATATTGGAGATTATGAGTGAGAAAGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAATTACTTGACTCAGGGTTCAGTTGTCAAACTATGAGTCGACAAGATAGTGGGTTGGACGAGTCAAGTGTTAACGGAGCTGAGTTTTGA 1605 0.415 MENHKNTNNKWRSPKKQTSLEPITTITPKMKWKKMMIFFNTTKTTQNPPHEFLCPISGSLMSDPVIVSSGHSFDRISIEACKNLNFTPQLQDGTTPNFTTLIPNLNLKSSILKWTQSSQTKIQTNPNLKTTENLVQTLISSKKHQKHQNDVVSEKNDQEEETRQISILTPRKTSYSSSEESIATATSSSSTTPRPQFQSFCYSSPSSSEIEPSTSPEEEEIVTKLRNPQHFIIEEALISLRKITRTKEETRVQLCTNRVLCSLRTLILSKTEVVRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCESQEHASCVFFSLALDDDNKTAIGVLGALLPLLHALKSESERTRHDSALALSHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMGQVLLILGNLGFGSDGRAAMLDAGVVECLVGLLGGVELDSESIRESCVGVLYALSHGGLRFKAVAKEIGVVEMLEKMEKMKSEKANEKVRRILEIMSEKEVEEEEVDWEELLDSGFSCQTMSRQDSGLDESSVNGAEF* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0431 534 ProSiteProfiles U-box domain profile. 47 121 IPR003613 GO:0004842|GO:0016567
Tpr2g0431 534 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 41 522 - -
Tpr2g0431 534 MobiDBLite consensus disorder prediction 143 166 - -
Tpr2g0431 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 135 IPR013083 -
Tpr2g0431 534 MobiDBLite consensus disorder prediction 140 196 - -
Tpr2g0431 534 PANTHER U BOX DOMAIN-CONTAINING 41 522 - -
Tpr2g0431 534 Pfam Armadillo/beta-catenin-like repeat 329 368 IPR000225 GO:0005515
Tpr2g0431 534 SUPERFAMILY RING/U-box 43 118 - -
Tpr2g0431 534 MobiDBLite consensus disorder prediction 167 196 - -
Tpr2g0431 534 SMART arm_5 329 369 IPR000225 GO:0005515
Tpr2g0431 534 SMART arm_5 409 452 IPR000225 GO:0005515
Tpr2g0431 534 SMART arm_5 288 328 IPR000225 GO:0005515
Tpr2g0431 534 Coils Coil 466 486 - -
Tpr2g0431 534 SMART Ubox_2 51 114 IPR003613 GO:0004842|GO:0016567
Tpr2g0431 534 Gene3D - 214 491 IPR011989 -
Tpr2g0431 534 MobiDBLite consensus disorder prediction 1 22 - -
Tpr2g0431 534 MobiDBLite consensus disorder prediction 201 220 - -
Tpr2g0431 534 Pfam U-box domain 49 118 IPR003613 GO:0004842|GO:0016567
Tpr2g0431 534 SUPERFAMILY ARM repeat 220 495 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0431 Tpr-Chr2 5024260 5027011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0431 49 534 U-box Gene Family AT5G40140 50.598 9.06e-148 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0431 - - lja:Lj2g3v1020040.1 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0431 2 5024260 5027011 Tpr2g0431 2 5024260 5027011 ECH
Tpr2g0431 2 5024260 5027011 Tpr6g3208 6 34635829 34641413 PCT