LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g0431	ATGGAGAATCACAAAAACACAAACAACAAATGGAGAAGTCCAAAAAAACAAACATCATTAGAACCAATCACAACAATAACACCAAAGATGAAATGGAAGAAGATGATGATTTTCTTCAACACAACAAAAACTACACAAAATCCACCTCACGAATTTCTCTGCCCCATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCCTCAGGTCATTCCTTTGACAGAATCTCCATTGAAGCTTGTAAAAATCTCAACTTTACCCCTCAACTTCAAGATGGAACCACCCCCAATTTCACAACCCTAATTCCCAATCTTAATCTCAAATCCTCAATTCTCAAATGGACCCAATCATCACAAACAAAAATTCAAACAAACCCAAATCTCAAAACAACTGAAAACCTCGTACAAACATTAATTTCCTCAAAAAAACATCAAAAGCATCAAAACGATGTCGTTTCAGAGAAAAACGACCAAGAAGAAGAAACACGACAAATCTCAATCTTAACACCACGAAAAACCTCGTACTCAAGCTCAGAGGAATCCATAGCTACTGCCACGTCATCATCTTCAACAACACCACGACCTCAATTTCAAAGTTTCTGTTACTCTTCACCTTCTTCATCTGAAATTGAACCTTCAACATCACCAGAAGAAGAAGAAATCGTAACAAAACTCAGAAACCCACAACATTTCATAATCGAAGAAGCATTAATCTCTCTCAGAAAAATCACAAGAACAAAAGAGGAAACAAGGGTTCAACTTTGCACGAACAGGGTACTATGTTCTTTGCGTACGTTAATTTTGTCGAAAACCGAGGTTGTAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCTCTTGAGAAAGTCAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTATTGAAGTTTGGATCGTGTGAATCACAGGAACACGCTTCTTGTGTGTTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCGATTGGTGTTTTAGGTGCTCTTTTGCCGTTACTTCACGCGCTTAAATCGGAGAGTGAGAGAACGCGCCATGATTCGGCTTTGGCGCTTTCTCATTTGTCTTTAGTGAGGAGTAATAGGGCCAAGATGGTTAAACTAGGTTTTGTTTCGGTTCTGTTGGGGATGGTTAAGTCGGGTCATATGATGGGTCAGGTTTTGTTGATTTTGGGTAATTTGGGATTCGGGTCGGATGGTCGGGCTGCTATGCTAGATGCGGGTGTTGTGGAGTGTTTGGTGGGTTTGTTGGGTGGGGTCGAGTTGGATTCTGAGTCAATTCGGGAGAGTTGTGTTGGCGTTTTGTATGCATTGAGTCACGGGGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGATTGGGGTTGTCGAAATGTTGGAAAAGATGGAGAAAATGAAGAGTGAGAAGGCTAACGAGAAGGTGAGGCGGATATTGGAGATTATGAGTGAGAAAGAGGTGGAAGAGGAGGAGGTGGATTGGGAGGAATTACTTGACTCAGGGTTCAGTTGTCAAACTATGAGTCGACAAGATAGTGGGTTGGACGAGTCAAGTGTTAACGGAGCTGAGTTTTGA	1605	0.415	MENHKNTNNKWRSPKKQTSLEPITTITPKMKWKKMMIFFNTTKTTQNPPHEFLCPISGSLMSDPVIVSSGHSFDRISIEACKNLNFTPQLQDGTTPNFTTLIPNLNLKSSILKWTQSSQTKIQTNPNLKTTENLVQTLISSKKHQKHQNDVVSEKNDQEEETRQISILTPRKTSYSSSEESIATATSSSSTTPRPQFQSFCYSSPSSSEIEPSTSPEEEEIVTKLRNPQHFIIEEALISLRKITRTKEETRVQLCTNRVLCSLRTLILSKTEVVRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCESQEHASCVFFSLALDDDNKTAIGVLGALLPLLHALKSESERTRHDSALALSHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMGQVLLILGNLGFGSDGRAAMLDAGVVECLVGLLGGVELDSESIRESCVGVLYALSHGGLRFKAVAKEIGVVEMLEKMEKMKSEKANEKVRRILEIMSEKEVEEEEVDWEELLDSGFSCQTMSRQDSGLDESSVNGAEF*	535

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr2g0431	534	ProSiteProfiles	U-box domain profile.	47	121	IPR003613	GO:0004842\|GO:0016567
Tpr2g0431	534	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 38	41	522	-	-
Tpr2g0431	534	MobiDBLite	consensus disorder prediction	143	166	-	-
Tpr2g0431	534	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	29	135	IPR013083	-
Tpr2g0431	534	MobiDBLite	consensus disorder prediction	140	196	-	-
Tpr2g0431	534	PANTHER	U BOX DOMAIN-CONTAINING	41	522	-	-
Tpr2g0431	534	Pfam	Armadillo/beta-catenin-like repeat	329	368	IPR000225	GO:0005515
Tpr2g0431	534	SUPERFAMILY	RING/U-box	43	118	-	-
Tpr2g0431	534	MobiDBLite	consensus disorder prediction	167	196	-	-
Tpr2g0431	534	SMART	arm_5	329	369	IPR000225	GO:0005515

Showing 1 to 10 of 19 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g0431	Tpr-Chr2	5024260	5027011	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g0431	49	534	U-box Gene Family	AT5G40140	50.598	9.06e-148	434

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g0431	-		-	lja:Lj2g3v1020040.1	553.518

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g0431	2	5024260	5027011	Tpr2g0431	2	5024260	5027011	ECH
	Tpr2g0431	2	5024260	5027011	Tpr6g3208	6	34635829	34641413	PCT

Showing 1 to 2 of 2 entries

Previous1Next