Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0420 ATGGGTGTCGGTGATCAAAAAAATGATTTCATGGCTAAGAAGAAGAAAGTGAAAAATGGCTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTAGATTGGTTTTTCATGGTTTTTGGTTTGTTTGGGGCTATTGGTGATGGCATAATGATCCCTTTGGTGTTGTTTATCACAAGCAAAGTTATGAACTCTATTGGTGGCTTTTCTGGACCAACAAGTAGCAATTTTGTCCACGACATCGATAAGAATGCAGTTTTTGTGTTATATGTGGCTGCTGCCTCCTTTTTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGCTGAAAGACAAGCTACAAGAATGAGAGTTAGGTACTTAAAAGCAGTTCTAAGACAGGAAGTAGCATACTTTGATTTGCATGTTACAAGCACTTCAGAAGTCATCACTAGTGTCTCTAGTGACAGCCTAGTAATTCAAGATGTTCTTAGTGACAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTGGCATTAGCATTGTTATGGAGATTAGCAATTGTTGGAATCCCTTTTGTGGTTCTACTAGTGGTTCCTGGTTACATGTATAAGAGAACATTGATGAGGTTAGCTAGAAAGATTAGAGATGAGTACAATCAAGCTGGTACAATAGCAGAACAAACAATATCTTCAATAAGAACTGTTTATTCCTTTGTAGGAGAAAGCAAAACCATGGCTGCTTTTTCTAATGCTTTAGAAGGATCAGTGAAGTTGGGATTGAAACAAGGTTTGGCTAAAGGCTTAGCCTTAGGAAGCAATGGTGTTGTTTATGCTATGTGGTCTTTAATATGCTATTATGGAAGCAGAATGGTTATGTATCATGGTGCTAAAGGTGGTAATGTATTTGCAGTTGGAGCATTATTAGCACTTGGTGGATTGGCTTTAGGAACTGGTTTATCAAATGTGAGGTACTTTTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCGAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTAACAGGAGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTGGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTCTTGTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCAACATATGAAGAAACTGTTGATGCTGCCAAAGCTTCTAATGCTCATAATTTCATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAATTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCAATTGCAAGAGCCATAATAAAAATGCCGAAAATTCTTTTGCTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTAGTCCAAGAAGCTTTAGACAAAGCCGCGGTTGGATGCACCACCATCATCATTGCTCACCGCTTATCCACCATCCAAAATGCTGACATCATTGCAGTCGTTCAAAATGGTAAGATCGTGGAATCAGGATCGCACGAAAGCCTAATGCAAAATGCCAATTCTCTTTACACATCCCTTGTTCATCTCCAAAAAAACAAAAATGACCAAAATGACAACACTTCGTCTATATTGAGTAGAGATCACATGCAAAACACGAGTAGTGGTAGACTCGTGAGTCGTTCTAGCTCTTTCAACTCAATGACACGTGGTGGTAGTTGTGGTCGTGCTGATGATGATAATGTTCGTTATAACAATGTTGTTGAAGATGTTGTTAATAATGTTGTTGTAGTTGATAAAAATAATAGTAGTACTAATAATAAGGTGAAGAAGGTAGAGGTTCCTTCGTTTCGAAGGTTGATGGAAATGAATGTGCCGGAGTGGAAGCAAGCGTGTTTAGGGTGTTTGAATGCGGTTTTATTTGGTGCGGTTCAACCTATATCCGCATTTGTGATAGGGTCAGTTGCTGGAGTTTATTTTCTAAATGACCATGATGAGATAAAGAAAGAAATTAGGATATATGCATTTTGTTTTCTAGGGTTAGCTTTGTCCTCAATGATTTTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAGAGGGTTAGAGAAAGAATTTTTTACAAAATACTCACTTTTGAAATTGGGTGGTTTGATGAGGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTGGGTGATAGATTGTCACTAATGATACAAACTATATCAGCAGTGGTAACAACATTCACAATGGGTCTAATCATTGCATGGAGATTATCCATTGTTATGATAGCAGTTCAACCAATTAACATATTTTGTTTCTACACAAGAAGAGTCCTTCTTAATAACTTATCAAGTAAAGCAATTAAGGCTCAAGATGATAGTAGCAAAATATCTGCAGAAGCTGTTTCAAATCTAAGAACCATCACATCTTTTTCATCACAAAATAGAATCCTCAAAATGCTTGAAAATGCTCAACAAGGCCCAAGTCATGAAAACATTAGACAATCTTGGTTTGCAGGTATTGGGCTTGCTTGTTTCCAAAGCCTCAATTTTTGTACTAGGGCCTTACACTTTTGGTATGGTGGATATCTTGTGTCACATGGTTATATAACAAAAAAAGCATTATTTGAGACTTTAATGATTTTTGTTAGCACTGGAAAAGTTATTGCTGATGTTGCTGGTAGCATGACTAATGATCTTGCTAAAGGTTCCGATGCCGTTGGGTCAGTTTTCGCAATCCTCGATAGGTCAACGAAAATTGAGCCAGATGATTTAGAAGGTTACAAGGTTGAAAATCTAATAGGAAAAATTGAACTTCATGATGTACATTTTGCATATCCTGCTAGACCTAATATGATGATCTTTCAAGGATTCTCAATTAAAATTGATGCCGGAAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCAACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGACAGTGACAATTGATGGTAGAGACATAAAGTCATATAATCTAAGGTCATTAAGGAAACATATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGGGAGAATATTGCATATGGAGCTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCATCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGAAGGTTATGAAACATTGTGTGGTGAAAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGGGCTATATTGAAGAATCCAGAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAAAAAATAGTGCAAGATGCTTTAGAAAGAGTTATGATTGGAAGGACAAGTGTAGTTGTGGCTCATAGGTTGAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAAGGAAGTATTGTTGAGAAAGGAACACATTCATCTTTGTTGGCTAAAGGACAAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAACACAATTGTTGATTCTTCACATGAAATCAATTAA 3843 0.3703 MGVGDQKNDFMAKKKKVKNGSFKSIFMHADVLDWFFMVFGLFGAIGDGIMIPLVLFITSKVMNSIGGFSGPTSSNFVHDIDKNAVFVLYVAAASFFACFLEGYCWTRTAERQATRMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSSDSLVIQDVLSDKVPNFLMNASMFIGSYIVALALLWRLAIVGIPFVVLLVVPGYMYKRTLMRLARKIRDEYNQAGTIAEQTISSIRTVYSFVGESKTMAAFSNALEGSVKLGLKQGLAKGLALGSNGVVYAMWSLICYYGSRMVMYHGAKGGNVFAVGALLALGGLALGTGLSNVRYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVTGEVEFNHVEFVYPSRPESVILNDFSLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEETVDAAKASNAHNFISLLPQGYDTQVGERGIQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGCTTIIIAHRLSTIQNADIIAVVQNGKIVESGSHESLMQNANSLYTSLVHLQKNKNDQNDNTSSILSRDHMQNTSSGRLVSRSSSFNSMTRGGSCGRADDDNVRYNNVVEDVVNNVVVVDKNNSSTNNKVKKVEVPSFRRLMEMNVPEWKQACLGCLNAVLFGAVQPISAFVIGSVAGVYFLNDHDEIKKEIRIYAFCFLGLALSSMIFNVLQHYSFAYMGEYLTKRVRERIFYKILTFEIGWFDEDQNSTGAICSRLAKEANVVRSLVGDRLSLMIQTISAVVTTFTMGLIIAWRLSIVMIAVQPINIFCFYTRRVLLNNLSSKAIKAQDDSSKISAEAVSNLRTITSFSSQNRILKMLENAQQGPSHENIRQSWFAGIGLACFQSLNFCTRALHFWYGGYLVSHGYITKKALFETLMIFVSTGKVIADVAGSMTNDLAKGSDAVGSVFAILDRSTKIEPDDLEGYKVENLIGKIELHDVHFAYPARPNMMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKEGYETLCGERGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKIVQDALERVMIGRTSVVVAHRLSTIQNCDLIAVLDKGSIVEKGTHSSLLAKGQSGAYYSLVSLQRRPTNTIVDSSHEIN* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0420 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1265 IPR027417 -
Tpr2g0420 1280 Gene3D - 352 601 IPR027417 -
Tpr2g0420 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Tpr2g0420 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0420 1280 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Tpr2g0420 1280 MobiDBLite consensus disorder prediction 607 640 - -
Tpr2g0420 1280 Pfam ABC transporter transmembrane region 38 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0420 1280 Pfam ABC transporter transmembrane region 702 969 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0420 1280 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1270 IPR039421 -
Tpr2g0420 1280 CDD ABC_MTABC3_MDL1_MDL2 1024 1265 - -
Tpr2g0420 1280 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524
Tpr2g0420 1280 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Tpr2g0420 1280 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Tpr2g0420 1280 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Tpr2g0420 1280 SMART AAA_5 1051 1245 IPR003593 -
Tpr2g0420 1280 SMART AAA_5 389 575 IPR003593 -
Tpr2g0420 1280 SUPERFAMILY ABC transporter transmembrane region 684 1008 IPR036640 GO:0005524|GO:0016021
Tpr2g0420 1280 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1024 1262 IPR003439 GO:0005524
Tpr2g0420 1280 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0420 1280 Gene3D - 1014 1273 IPR027417 -
Tpr2g0420 1280 Gene3D ABC transporter type 1, transmembrane domain 25 614 IPR036640 GO:0005524|GO:0016021
Tpr2g0420 1280 Gene3D ABC transporter type 1, transmembrane domain 665 1012 IPR036640 GO:0005524|GO:0016021
Tpr2g0420 1280 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1270 - -
Tpr2g0420 1280 MobiDBLite consensus disorder prediction 607 641 - -
Tpr2g0420 1280 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1007 - -
Tpr2g0420 1280 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Tpr2g0420 1280 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Tpr2g0420 1280 Pfam ABC transporter 1043 1193 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0420 Tpr-Chr2 4881744 4895990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0420 731 1278 Calmodulin-binding Proteins AT2G36910 38.321 3.05e-113 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0420 K05658 - qsu:112027806 1753.8