Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0406 ATGAAGAGGGCAAGAGATGATATTTACTCTTCTTCTCAATTCAAACGTCCTTTTGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCCCGGAAATGGAGGTGGTGGCGGAGGAGGTGGACTTGTTATCGGTGGAGGAGGTGGGGGAGCAACCACTTCCCAAAAACTGACTACGAATGATGCTTTATCATATTTGAAGGAAGTGAAAGATATGTTCCAAGATCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCATGGTGTCATAGAAAGGGTCAAGGAACTATTCAAAGGTCACAACCATTTGATTTTTGGATTTAACACTTTCCTGCCAAAAGGATATGAGATAACACTTGATGAGGAAGAGGCTCCTCCTCCAAAAAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGTAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAGGAGCATAGAGATTTGCTCGAGGAGTTTACTAGATTCTTACCAGATAATTCGGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCATTGCAGCGCTTCAATGAGCGGAGTTCTATGGCACCAATGATGCGGCAAATGCAAGCAGAAAAGCAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATCTGAGTGTTGAACGTCCTGATCTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGTGAGAGCAGGGATAGAAGGATTCGAGATCATGATGATAGAGAACATGATCTTGATAACTCGCAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGACTGTCTTCTGACTTTGCTTCTCATGATGATAAAGATGCATTAAAGATCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGAATACCAAACATTCTTGAAGTGCCTTCATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTAGAAAATTTGGTGAGCGATATACTTGGAAAGTATCCTGATCTCATGAGTGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTTCTTGCTGGTGTCATGAGTAAAACTACTGACGGTCATTCATCAAGATCAACAAAGTTGGAGGACAAAGAACACAAGCGTGACATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGACCTTGGTGCGCAAGTATTGAATGATCATTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGTTGGACATGTTATTAGAATCTGTGAGTTCCGCTGCTAAACGGGCTGAAGAGTTGTATAACAGCATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGTATTGAAGATCACTTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTTCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCGGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGCGAGGAGGTATTCTCAAGTAAAGAGTTATTCAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGACAGGAAAGTAGGACAAAACGCTCGGAGTTCTGTTGCACCTAATGTAGAAGGTGATGGAAGCCCTCACAGAGACTCCATTTCAAGGTTAGCAAAATCTGACAAGAATGAAGTTGATGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGGCCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATATTTTAATTGATAATAAAGGGCAGAAAAGTGTTGAATGCAGTGATAAAGGCCCTGGATTTGGTAAACAGTTTTCATCTGATGATCAAGCAGGTAGAAACTCTGCATCTGTCACAATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATACGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAACCATAGCCAAGTCTCCAAGTTCTAATGTACCTTTGGTGGAGGGATGTGACATTGCCGCTCCAGTACCACCAGTTGCCAATGGCATGTTAGTTGAGAGCAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGACGAGGATAACTTTGTTGCTTATGAAGATTCAAACGTGCAGTCAAAGCACAATGTTGATAGCAGCAAATATGAGTCTAAAAATGGAGAGGCTGGAGGTGAAAATGATGCAGATGCTGATGATGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGATGATGAAGGCTTTCGGGGAGATCATGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGCGAAGGTGAAGCTGAGGGGACGTCTGACACACAAACCAGAGGAGATGGTTCACCATTAACATTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTCGTTGAAGACATGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAAATTCTTTACGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATGCTAGTTCCACAGATCCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCCGCTGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAATCTTATGTGTTATTCACATTGGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACCGTTGCAACTGATGAGGAAGACAATAAGCTTCTTCAGTTATACGAGTACGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCGTCCTTAATGAGGAGAACGTATATCGTTTTCAATCTTCATCTAGCCCTTCTCGGCTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAAATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCTCATGGCATTTTACTAGAAAGAAACAAACCGAAATACGGGGACTTAGATGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAATAATTAATGGATTGGAATGCAAGATATCTTGTAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAGAAAAAGACGAATATCTTCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAAGAAAGATACCGCAAATTGATGGCGTCCTCCACCTAA 4104 0.4059 MKRARDDIYSSSQFKRPFGSSRGDSYGQGPGNGGGGGGGGLVIGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTHGVIERVKELFKGHNHLIFGFNTFLPKGYEITLDEEEAPPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMAPMMRQMQAEKQRYRRDRFPSHDRDLSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRFPDKKKSVKKAEAYGLSSDFASHDDKDALKIMYSQAFSFCEKVKEKLSSAEEYQTFLKCLHIFSNGIIRRNDLENLVSDILGKYPDLMSEFNDFLERCENIDGFLAGVMSKTTDGHSSRSTKLEDKEHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSDLGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNSIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSISAGAKHPLIPHLEFDFSDAEIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGVTSQSHGTERIEDRKVGQNARSSVAPNVEGDGSPHRDSISRLAKSDKNEVDGRVTEVKNGHQTSVAANGKENGSVGRDDILIDNKGQKSVECSDKGPGFGKQFSSDDQAGRNSASVTIRGESSVNRTNLDTSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDIAAPVPPVANGMLVESSKVKSHEESSVPCKVEKEEGELSPNADSDEDNFVAYEDSNVQSKHNVDSSKYESKNGEAGGENDADADDEDSENVSEAGEDVSGSESADDEGFRGDHEEEDIEHDDVDGKAESEGEAEGTSDTQTRGDGSPLTLSERFLSTVKPLTKHVSAVSFVEDMKDSRVFYGNDDFYALFRLHQILYERILSAKENSTSAEMKWKAKDASSTDPYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVVLNEENVYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPNFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKIINGLECKISCNSSKISYVLDTQDFFFRPRRKRRISSSSSSTSSSRSRKEREERYRKLMASST* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0406 1367 Gene3D Paired amphipathic helix 60 122 IPR036600 GO:0006355
Tpr2g0406 1367 ProSiteProfiles PAH domain profile. 54 124 IPR003822 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 842 884 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 982 996 - -
Tpr2g0406 1367 SUPERFAMILY PAH2 domain 135 208 IPR036600 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 420 440 - -
Tpr2g0406 1367 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Tpr2g0406 1367 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Tpr2g0406 1367 Pfam Paired amphipathic helix repeat 77 121 IPR003822 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 1338 1367 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 1 36 - -
Tpr2g0406 1367 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 228 313 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 920 941 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 422 440 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 1349 1367 - -
Tpr2g0406 1367 Pfam C-terminal domain of Sin3a protein 1083 1330 IPR031693 -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 919 1050 - -
Tpr2g0406 1367 Gene3D Paired amphipathic helix 331 405 IPR036600 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 740 884 - -
Tpr2g0406 1367 SUPERFAMILY PAH2 domain 52 123 IPR036600 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 813 827 - -
Tpr2g0406 1367 SUPERFAMILY PAH2 domain 336 403 IPR036600 GO:0006355
Tpr2g0406 1367 PANTHER SIN3B-RELATED 1 1345 IPR039774 GO:0003714
Tpr2g0406 1367 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1345 - -
Tpr2g0406 1367 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 967 981 - -
Tpr2g0406 1367 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Tpr2g0406 1367 SMART hdac_interact2seq4b 462 562 IPR013194 -
Tpr2g0406 1367 Pfam Sin3 family co-repressor 464 555 IPR013194 -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 243 313 - -
Tpr2g0406 1367 MobiDBLite consensus disorder prediction 771 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0406 Tpr-Chr2 4780848 4791788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0406 41 158 WRKY Transcription Factor Family AT4G12020 48.333 2.01e-21 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g0406 Sin3a_C 6e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0406 K11644 - gmx:100807181 2089.69