Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0405 ATGGGTGGTGGTGATCATAAAAATGTTTCTATTGTTAAGAAAAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTATTTTTACATGATTTTTGGTTTATTGGGATCTATTGGTGATGGAATAATGACTCCTTTAGTTTTGTTTATTACAAGCAAAATTATGAACTCTCTTGGTAATGCTTCTGGCACATCAAACAACAATTTTGTTCATAACATCAATAAGGTTCTTACTCTATTTATCTCTTTTTCAAGCTTAAATTATATATCAAGAATTAAAGAAAATAATATTGGCCTTATTTGGTTTGACTTTATTAACTTTGTGATGCAGAATGCTGCTGTTTTGTTATATTTGGCTTGTGTCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACTAGCACATCAGAGGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTGGCATTTGCATTGTTATGGAGATTGGCCATTGCTGGATTCCCTTTTGTGATTTTTCTTGTGATTCCTGGTTTGATGTATGGAAGGACTTTGATGGGATTAGCTAAAAAAATCAGAGAAGAGTACAATCAAGCCGGAACAATAGCAGAACAAGCAATATCTTCAATCAGAACTGTTTATTCCTTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTCATGCTTTGGATGGATCAGTGAAGTTGGGATTGAAACAAGGTTTGGCTAAAGGTTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTTATGTCTTATTATGGTAGCACATTGGTCATGTATCATGGTGCTAAAGGTGGTACTGTTTTTGCAGTTGGAGCATCACTAGCACTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAGTACTTTTCAGAAGCAAGTGTTGCAGGAGAAAGAATAATGGAAGTAATAAAAAGAGTTCCAAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTAACAGGAGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTTATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTTGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTCTTGTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTATTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAAGATGCTACATATGAAGAAATTGTGGATGCTGCTAAAGCTTCTAATGCTCATAATTTTATTTCATTGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCAATTGCAAGAGCCATAATAAAAATGCCGAAAATTCTTTTGCTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTAGTCCAAGAAGCTTTAGACAAAGCCGCGGTTGGACGGACCACCATCGTCATTGCTCACCGCTTATCCACCATTCAAAATGCGGACATTATTGCGGTTGTTCAAAATGGTAAGATCATGGAAACAGGATCGCACGAAAACCTCATGCAAAATGACGATTCTCTTTACACTTCCCTCGTTCGTCTCCAACAAACAAAAAATGACCAAAACGACGACACTTCATCCATCATGAATAGAGATCACATGCAAAAAACGAGTAGTCGTAGACTCGTGAGTCATTCTAGCTCTTTCAACTCAATGACTCGCGGTGGTGATGATATCCTTAATTATAACAGTGGTGGTGATGATATCGTTAATAATGTCGTTGTAGATGATGATCATAATAATAATAATAATAATAGTCATAAAAAGAAGAACGTTGAGGTTCCTTCGTTTCGAAGGTTGTTAGCGATGAATCTACCAGAGTGGAAACAAGCATGTTTGGGTTGTTTAAATGCGCTTTTATTTGGTGCGATTCAACCTGTATATGCTTTCGCAATGGGGTCTGTTATATCGGTTTATTTTTTGGAGGACCATGATGAGATTAAGAAGCAAATTAGGATCTATGTGTTTAGTTTTCTAGGGTTGGCTGTGTGTTCAATGGTTGTTAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAAAGGGTCAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAACTCTACAGGTGCAATTTGCTCTAGACTTGCCAAAGATGCCAATGTGGTAAGATCTTTGGTTGGTGATAGATTGGCTCTAGTGGTACAAACTATATCAGCAGTTGTAATAGCATTCACAATGGGTCTAATCATTGCATGGAGATTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGCTTCTACACAAGGCGTGTCCTTCTTAAAAACATGTCAAAACAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATCAATGCTTTTTCATCTCAAGATAGAATCCTCAAAATGCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAGTCTTGGTATGCAGGTATTGGGCTTGGTTGTTCACAAAGCCTCAATTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATTTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGATGCCGTTGGATCGGTGTTCGCAATTCTTGATAGGTATACAAAAATTGAGCCAGATGATATAGAAGGTCACAAAGCCGAAAAAGTAATCGGAAAAATTGAACTTCATGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATCTTTCAAGGATTCTCAATTAAAATTGATGCCGGAAAATCCACGGCTTTGGTTGGGGAAAGTGGTTCTGGAAAATCAACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGACAGTGACAATTGATGGTAGAGACATAAAGTCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGGGAGAATATTGCATATGGAGCTTATGATGATAAAGTTGATGAGAGTGAGATTATTGAGGCATCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGAAGGTTATGAAACATTGTGTGGTGAAAGAGGAGTTCAACTTAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGGGCTATATTGAAGAATCCAGAGGTGTTACTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAAATAGTGCAAGATGCTTTAGAAAGAGTTATGGTTGGAAGGACAAGTGTGATTGTGGCTCATAGGTTAAGTACTATACAAAATTGTGATTTGATTGCTGTTTTGGATAAAGGAAGTATTGTTGAGAAAGGAACACATTCATCTTTGTTGGCTAAAGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGACCAACCAACACAATTGTTGATTCTTCTCATGAAATCAACTAA 3933 0.3694 MGGGDHKNVSIVKKKKKKNGSFKSIFMHADVLDYFYMIFGLLGSIGDGIMTPLVLFITSKIMNSLGNASGTSNNNFVHNINKVLTLFISFSSLNYISRIKENNIGLIWFDFINFVMQNAAVLLYLACVSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIAGFPFVIFLVIPGLMYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSHALDGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSTLVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVTGEVEFNHVEFVYPSRPESVILNDFSLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIVIAHRLSTIQNADIIAVVQNGKIMETGSHENLMQNDDSLYTSLVRLQQTKNDQNDDTSSIMNRDHMQKTSSRRLVSHSSSFNSMTRGGDDILNYNSGGDDIVNNVVVDDDHNNNNNNSHKKKNVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYVFSFLGLAVCSMVVNVLQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAICSRLAKDANVVRSLVGDRLALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSKQAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKMLEKAQQGPSHESIRQSWYAGIGLGCSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDIEGHKAEKVIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKEGYETLCGERGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKIVQDALERVMVGRTSVIVAHRLSTIQNCDLIAVLDKGSIVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNTIVDSSHEIN* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0405 1310 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 370 - -
Tpr2g0405 1310 Pfam ABC transporter transmembrane region 37 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0405 1310 Pfam ABC transporter transmembrane region 733 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0405 1310 SMART AAA_5 424 616 IPR003593 -
Tpr2g0405 1310 SMART AAA_5 1081 1275 IPR003593 -
Tpr2g0405 1310 SUPERFAMILY ABC transporter transmembrane region 33 381 IPR036640 GO:0005524|GO:0016021
Tpr2g0405 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 633 IPR003439 GO:0005524
Tpr2g0405 1310 Gene3D ABC transporter type 1, transmembrane domain 699 1042 IPR036640 GO:0005524|GO:0016021
Tpr2g0405 1310 Gene3D ABC transporter type 1, transmembrane domain 25 657 IPR036640 GO:0005524|GO:0016021
Tpr2g0405 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 362 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0405 1310 MobiDBLite consensus disorder prediction 638 667 - -
Tpr2g0405 1310 CDD ABC_6TM_Pgp_ABCB1_D2_like 721 1037 - -
Tpr2g0405 1310 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1054 1292 IPR003439 GO:0005524
Tpr2g0405 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 635 IPR027417 -
Tpr2g0405 1310 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524
Tpr2g0405 1310 Coils Coil 898 918 - -
Tpr2g0405 1310 Pfam ABC transporter 415 564 IPR003439 GO:0005524
Tpr2g0405 1310 Pfam ABC transporter 1073 1223 IPR003439 GO:0005524
Tpr2g0405 1310 CDD ABC_MTABC3_MDL1_MDL2 397 635 - -
Tpr2g0405 1310 MobiDBLite consensus disorder prediction 645 659 - -
Tpr2g0405 1310 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 738 1019 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr2g0405 1310 SUPERFAMILY ABC transporter transmembrane region 713 1038 IPR036640 GO:0005524|GO:0016021
Tpr2g0405 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1295 IPR027417 -
Tpr2g0405 1310 Gene3D - 1044 1303 IPR027417 -
Tpr2g0405 1310 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 83 IPR039421 -
Tpr2g0405 1310 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 85 1300 IPR039421 -
Tpr2g0405 1310 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 83 - -
Tpr2g0405 1310 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 85 1300 - -
Tpr2g0405 1310 CDD ABC_MTABC3_MDL1_MDL2 1054 1295 - -
Tpr2g0405 1310 ProSitePatterns ABC transporters family signature. 1195 1209 IPR017871 GO:0005524
Tpr2g0405 1310 Gene3D - 387 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0405 Tpr-Chr2 4760387 4770917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0405 733 1308 Calmodulin-binding Proteins AT2G36910 36.505 1.18e-111 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0405 K05658 - vvi:100854950 1845.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0405 2 4760387 4770917 Tpr2g0405 2 4760387 4770917 ECH