Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0372 ATGGGAAAAATAATGGTACAAAGTTCTACTAAGGGTTTGTTTATTTTCTTGGTTACTTTTGCCATTACTATTCCATGCCTTGAGGCTGGGATTGGTGAGTTTGATGATTTTCTTAAAGCTGAAGAAGAAGAAGCCCATAAAATTGCTCTTGATAGTTATATTCCAGTTCCTGAAGAAGTTGTACATGATCTCAATGTTGATGTTCACTTGGCAATGGAAGAAGCAAACGACACAAGGAGGGAATTGAAGGAAAATCATAATGAAGGACCATGTGAATCAAGCAACCCAATTGATAATTGTTGGAGGTGCAAAGCAGATTGGGCTGAAAATAGATATCGATTATCAAAATGTGGTAAGGGCTTTGGAAGAAAGGCCGTTGGTGGGCTTGGAGGCCCAATTTATGTGGTAACTGATGAGTCAGATGGTGACATGGTAAACCCAAAACCTGGTACACTTAGATATGGTGCTGTTCAAAAAGGACCATTGTGGATAACATTCCAACGTAGTATGATCATTAGATTGAACCAAGAATTGATGGTTTCTTCTAACAAGACAATTGATGGTCGTGGAGTTAATGTTCAAATTAGGGATGGTGGTGGAATTACTATGCAATTTGTTAATAATGTTATTATTCATGGTCTTCATATTACAAATATTAAAGCTAAACCAGGTGGTATGATTAGGGATTCTTTTGATCATTATGGACTAAGAACAAGGAGTGATGGTGATGCTATTTCTATTTATGGATCTTCTAATATTTGGATTGATCATCTTTCACTCTCTCAATGTGAAGATGGTCTTGTTGATGTTATTTTTGGTTCTACCGGCGTCACCATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCTAGTGATAAATTCGAAGGTGACAGGATTATGCAAATAACAGTTGCATTCAACCATTTTGGACAAGGATTAATCCAAAGAATGCCAAGGTGTAGATGGGGATTTGTTCATGTTTTGAACAATGATTACACACATTGGATTATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAACCGATTCATTGCTCCGGACAACGACGCCGCGAAGGAAATCACACATAGAGATTATGCTACACCTGAAGTTTGGAAGAATTGGCAATGGTCTTCAGAAATGGACTTGTTCATGAATGGTGCTAAGTTTGTTACATCAGGTGCACCTATTAATAGGGCTCCCTACAAGAAAGGGTTTATGATGAAACCAAGAGATGGAACAAATGTTAGTAGACTAACAAGGCATGCTGGTGCCCTAAATTGTATAGTAGGAAAGCCTTGTTAG 1335 0.3768 MGKIMVQSSTKGLFIFLVTFAITIPCLEAGIGEFDDFLKAEEEEAHKIALDSYIPVPEEVVHDLNVDVHLAMEEANDTRRELKENHNEGPCESSNPIDNCWRCKADWAENRYRLSKCGKGFGRKAVGGLGGPIYVVTDESDGDMVNPKPGTLRYGAVQKGPLWITFQRSMIIRLNQELMVSSNKTIDGRGVNVQIRDGGGITMQFVNNVIIHGLHITNIKAKPGGMIRDSFDHYGLRTRSDGDAISIYGSSNIWIDHLSLSQCEDGLVDVIFGSTGVTISNCHMTKHNDVMLFGASDKFEGDRIMQITVAFNHFGQGLIQRMPRCRWGFVHVLNNDYTHWIMYAIGGSSGPTILSQGNRFIAPDNDAAKEITHRDYATPEVWKNWQWSSEMDLFMNGAKFVTSGAPINRAPYKKGFMMKPRDGTNVSRLTRHAGALNCIVGKPC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0372 444 PANTHER PECTATE LYASE 18-RELATED 10 444 IPR045032 GO:0030570
Tpr2g0372 444 SUPERFAMILY Pectin lyase-like 95 435 IPR011050 -
Tpr2g0372 444 Pfam Pectate lyase 177 360 IPR002022 -
Tpr2g0372 444 PANTHER PECTATE LYASE 10 444 - -
Tpr2g0372 444 Gene3D - 94 437 IPR012334 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Tpr2g0372 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Tpr2g0372 444 SMART amb_all 169 366 IPR002022 -
Tpr2g0372 444 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0372 Tpr-Chr2 4448766 4451084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0372 14 444 Polysaccharide Lyase AT5G15110 53.233 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0372 K01728 - gmx:100810615 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0372 2 4448766 4451084 Tpr5g3010 5 53040393 53042477 ECH
Tpr2g0372 2 4448766 4451084 Tpr2g0372 2 4448766 4451084 ECH
Tpr6g3197 6 34490125 34492809 Tpr2g0372 2 4448766 4451084 ECH
Tpr2g1910 2 22836851 22839747 Tpr2g0372 2 4448766 4451084 ECH