Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0370 ATGAGCAATGAGATTGGGCAGAAACCTCCACCTTCAATACTCGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGACGATCCTAGGTTGAGAAATTCCCAACCTTCAACTGAAGAAATTGTTCAGATTTACGAGTTGTTGTTATCTGAACTCACTTGTAATGTTAAACCTATCATCACTGATCTTACAATCATTGCTGAACAACATCGTGAACATGCTAAAGGAATCGCTTATGCTATTTGCGCTCGTATTATTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTACCTCTTGGACAGTATTGTGAAGAATATTGGCCAGGAATATATTCGACATTTCTCATCACGTCTTCCTGAAGTTTTCTGCGAGGCATACAGACAGGTTAATCCAAGTTTGCATTCTTCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCTTGCGTAAGATTGATGGACAATTACAATTTTCTCAAGTAGTTAATAATCAGTCATCAAGTGGTAATCCCCTCAGGGCTTCTGAATCACCTCGACCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACACTCTACTTCAATTATGGATAGTGTTGTAGGCGAAAGATTAGACTCAACAGGAGCGGTAGGAAATGCAAATTTAGGCCTTGTAGCTAGTAAGATTAATCAATTTGTCCCAAGTAGAGTTAGACGATCCTCATCACCATCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGACGAATATGTAGCTGACAATCCTTCTGGTAGGACAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGATTGGCCGCGAAAGCAATTTTCTGGTGATGGTCGGAAAAGATTTCAAACTTCTATGACATATAGTCTTAGTAACGGACAACCGCGTCAAAATCCAAGAGCGCTAATTGACGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGCAAGCCTTTGTTAGTTGATCGGCTGGATAGAAATGGTATGGATAAGGTTATTTCAACATCATGGCAGAACACTGAAGAGGAAGAGTTTGATTGGGAAGATATGAGTCCAACTCTAGTAGATCACAGTAGAAATAATAGTTTCTTGCAACCAACTATTGGTTTCTCCTCAGAAAAGCCTGTTGCAGCAAATGCAACTTCTTCAGTGTCAAGGATGTTTCCGGGTCTCACGCCTAATATTGAGTACCGTCCACCAGTTTTGCCGGCAACTTTTGAAATGAGACACTCTATTAATGTGCATGCTCCTCGTCCTCTCAGCTTAAATCCTATATTTCCATTGAAGAATCCTGTTATGAATCCATTTGAATCAATAAATGCTAATAGTAGCATTGTTAATCATGGTTTAAATAGACCTTTTCCAAATCAAGACCAATTGTTGCACGGTGTTGAGAACAATGATATCACTAAAAGAAACCAGCATCAATTACCCAATCAGCCAGCTGGTCTGATTTCATCTAATCCGCAAAACAGCGGACAACCACCACAATTGCAGTTTTTTCCATCTCAGGATTCAGCAGCATCACAATTTACTTATAGGACCCCTTTGCAAGGACATGGTGCTTCTATAAGTAACCCCCTGTCAAATGCACGCCCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCCCAAACAACCCTTTACATTTCCAGGGGGGAGCTATGCGACCTTTTCCTCCGGCCGGCCCACATCGTCCACCCCAAATGCTACCTCATCCCAATCCTAGTCCTTTTGTGTCAAGCCAACAGCCATCTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCCACACAGGATTTTGTTGGCATTGAGTTTGATCCCGATATTCTGAAGGTTCGTCATGAATCTGCAGTCAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTCAGTGAAACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACCGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACCGAGGAAAAGAAAGATGATGAAGAATTGGCAGTTCCTGCTGAAGAGGATCAGAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAGACAGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCCAATGGAATACTAACAAGCATGGACAGGTCACAGTTAGGACCTATTATTCATGCTAAATGCAGATCTGAATCTACTACCTCCCCATCTGAAGATTTTGTGATGGATGAAGGGGGTACATATGAAGAAGGAAATCAAAGAAAACGAATGCGGGCATGA 2517 0.4235 MSNEIGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHREHAKGIAYAICARIIEVSADQKLPSLYLLDSIVKNIGQEYIRHFSSRLPEVFCEAYRQVNPSLHSSMRHLFGTWSKVFPPSVLRKIDGQLQFSQVVNNQSSSGNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLDSTGAVGNANLGLVASKINQFVPSRVRRSSSPSRIGLDRHMPSYMDEYVADNPSGRTVERESPHRAVDYGLVKGLGREEELSDWPRKQFSGDGRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVDRLDRNGMDKVISTSWQNTEEEEFDWEDMSPTLVDHSRNNSFLQPTIGFSSEKPVAANATSSVSRMFPGLTPNIEYRPPVLPATFEMRHSINVHAPRPLSLNPIFPLKNPVMNPFESINANSSIVNHGLNRPFPNQDQLLHGVENNDITKRNQHQLPNQPAGLISSNPQNSGQPPQLQFFPSQDSAASQFTYRTPLQGHGASISNPLSNARPVMPLPLPGQRIPNNPLHFQGGAMRPFPPAGPHRPPQMLPHPNPSPFVSSQQPSVGYSNLINSLMAQGVISLANQAPTQDFVGIEFDPDILKVRHESAVSALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGILTSMDRSQLGPIIHAKCRSESTTSPSEDFVMDEGGTYEEGNQRKRMRA* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0370 838 Gene3D - 30 162 IPR008942 -
Tpr2g0370 838 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Tpr2g0370 838 SMART 558neu5 40 162 IPR006569 -
Tpr2g0370 838 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 813 - -
Tpr2g0370 838 ProSitePatterns Zinc finger C2H2 type domain signature. 672 692 IPR013087 -
Tpr2g0370 838 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 813 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tpr2g0370 838 MobiDBLite consensus disorder prediction 168 187 - -
Tpr2g0370 838 CDD CID_Pcf11 45 162 - -
Tpr2g0370 838 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Tpr2g0370 838 Pfam CID domain 55 156 IPR006569 -
Tpr2g0370 838 MobiDBLite consensus disorder prediction 808 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0370 Tpr-Chr2 4412603 4417666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0370 610 838 C2H2 Transcription Factor Family AT4G04885 69.869 1.22e-106 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g0370 CID 4.1e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0370 K14400 - gmx:100794796 870.922