Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0359 ATGGCTTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATGAAGATCATCATCATGACCACCTTCATTCTTCTTCATCTTCTCTCAACTCTTTCCCTTCCTTTCCACCTCATCAACACTTTCAAGGTAGTGGCAACCATGGTGGTGCATCTTACATGATGAAGAGATCCATGTCATTTTCAGGCATAGAAAACAATCACAACCACATGAACAATAAGTGCGATGAATTAATGCATGGAGATGAAGATCAATTATCAGATGAAGAAGGTTACTCCCAACTTGGTGAAAAGAAGAAGAGGCTGAGTTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGATAGGAAAATGCAATTGGCTAAAGCTTTGGGATTACAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCTCTTAAGGCTGATAATGATTCTCTTAAGGCTCAAAATCATAAACTTCATGCAGAGCTACAAACTCTAAAGAATAGGGATTGCTTTGAAAATGGAACAATTAGCCTCAAAAAGGAAAATGAATATTCTTGGAGCAATGGAAGTGATAACAGCTCAGATATGAATCTAGATCTTTCTAGAACACAAATAATGAGCAGTCCTTTATCTTCACAAAATGGAAAAACTCTTCTACAAACTTCCCTTAAGCCTACAAGCATGACACAACTCCTTCAATCTTCAACAAGATCTGATCTTCAAGATGAAAGTTTTTGCAATATGTTTCATAACATTGATGAGCAGCAGAGTTTATGGCCTTGGACTGATCATCAGCAGCAACACCATTTCCAATAA 888 0.3694 MAFPPSHTFIFQTHEDHHHDHLHSSSSSLNSFPSFPPHQHFQGSGNHGGASYMMKRSMSFSGIENNHNHMNNKCDELMHGDEDQLSDEEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDSLKAQNHKLHAELQTLKNRDCFENGTISLKKENEYSWSNGSDNSSDMNLDLSRTQIMSSPLSSQNGKTLLQTSLKPTSMTQLLQSSTRSDLQDESFCNMFHNIDEQQSLWPWTDHQQQHHFQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0359 295 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Tpr2g0359 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 294 IPR045224 GO:0003700
Tpr2g0359 295 SUPERFAMILY Homeodomain-like 89 154 IPR009057 -
Tpr2g0359 295 Pfam Homeodomain 97 150 IPR001356 GO:0003677
Tpr2g0359 295 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 294 - -
Tpr2g0359 295 Coils Coil 144 192 - -
Tpr2g0359 295 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Tpr2g0359 295 CDD homeodomain 97 153 IPR001356 GO:0003677
Tpr2g0359 295 SMART HOX_1 95 156 IPR001356 GO:0003677
Tpr2g0359 295 Pfam Homeobox associated leucine zipper 152 192 IPR003106 GO:0006355|GO:0043565
Tpr2g0359 295 Gene3D - 96 157 - -
Tpr2g0359 295 PRINTS Lambda-repressor HTH signature 123 132 IPR000047 GO:0003677
Tpr2g0359 295 PRINTS Lambda-repressor HTH signature 132 148 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0359 Tpr-Chr2 4321471 4325133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0359 1 287 Homeobox Transcription Factor Family AT3G01220 50.000 1.51e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr2g0359 Homeodomain 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0359 K09338 - gmx:100790803 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0359 2 4321471 4325133 Tpr2g0359 2 4321471 4325133 ECH