Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0349 ATGGAAGAAAGAACTGAGATGGATAATAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTACCTTAAGAGAAAAATTCAACAAAAGTCTCTTCCTATTGAACTTATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAGCTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAACAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCATCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCAAACTCTCCTCCCAAAAAATTTTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATATGTAGGATCTTCAAGAAAACTAATTCCCTTTCAATGGTACAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTCTCACAAACTACAAACATCAACCAATTCTGTTCAGAAAATAATATCTCATGCACAACAGAACAAGCATTATCATCAGGGACAAACATGCAAATCAACAAGAATGAGCTACAACAAGTTTCCAATACCAACAACTTCTCAGCTTCAGATTTTCCAACATACAAACCAATCAACAACATTAACACAATTTCAAAATCCTCACAAATTCCTTGTTCTAATGGAGACATTGTTGATAACCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACAAATAATCAATATAGTGGATTCTCAATTAGTCTACCTCAAGATATGCAACCAAACATTGGCTTAGAAAATGAACAATTAGAAGACCAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAACTTAATCAATGGGAAAATAATCTAGGAAGAACAATTGATTTTCCATTCAGCTTGTCTCCAAATTTTGATGCTTTGAGGAATAGTGTTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACCTATGTCACTAGTAAATGTTACACTTAG 1209 0.3565 MEERTEMDNKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLSQTTNINQFCSENNISCTTEQALSSGTNMQINKNELQQVSNTNNFSASDFPTYKPINNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYSGFSISLPQDMQPNIGLENEQLEDQGWRKNIQDQMQLNQWENNLGRTIDFPFSLSPNFDALRNSVIWDSPPCTSEMSTTYVTSKCYT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0349 402 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 400 - -
Tpr2g0349 402 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Tpr2g0349 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 400 - -
Tpr2g0349 402 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Tpr2g0349 402 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Tpr2g0349 402 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0349 Tpr-Chr2 4166479 4170952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0349 8 286 NAC Transcription Factor Family AT1G26870 56.164 1.04e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr2g0349 NAM 6.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0349 - - mtr:MTR_6g011860 719.924