Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0344 ATGGTGAGACCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACTAATACTGGTTTATTAAGGTGTAGTAAGAGCTGCAGACTTAGATGGACTAATTATCTAAGGCCAGGAATAAAAAGGGGTAACTTCACTGATCAAGAGGAGAAAATGATTATCCATCTCCAAGCTCTTTTAGGAAATAGATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAGATAATGATATAAAAAATTATTGGAACACTTATTTGAAGAAAAAGCTGAAAAGATTGGAAACAAGTACTTCTTCTGAATCATGTTTAGGACATGATAATTTCTCAGTTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGACTTCAAACCAACATTGACATGGCTAAAAAAGCACTTAGTGATGCACTTTCACCACAAAAAAGCACTTCTAGCAACAACTTATTATTACCACTTGAGTCAAATATTGGTAGTGAAAGTTCTTTTTGTTCAACAAAACCAACACAAACACAAACACAATCTTTGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGTTGGATGAAAAATAAGCCAAAAGGGTCAAATGGTAATTACTCAAATGTGACACAAAATTCATTTAATATTGATTTGGCTTATGGTGGAAATTATGAGACTAGTGCTTCTAGTGAAGGAATGGAAAAAGGGTCATCAACAAATGTTGAAATTTCTGAGACTTTTGAGTCTTTGTTTGGTTATGAGTCTTTGGATTCATCAAATTCTGATTCTACTAATCTTTTTCAAGATGAGAGCAAACCTGAAATTATTGGTGATGGTGAAATTATGCCTTTTTCTTTGCTTGAAAAATGGCTTCTAGATGATGGTGGTATTCAAGAGAAAGTTGGTCTTAGTGAAATTAATTATGTATTTTGA 1005 0.3463 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKRLETSTSSESCLGHDNFSVSQPIARGQWERRLQTNIDMAKKALSDALSPQKSTSSNNLLLPLESNIGSESSFCSTKPTQTQTQSLCYASSADNIARLLKGWMKNKPKGSNGNYSNVTQNSFNIDLAYGGNYETSASSEGMEKGSSTNVEISETFESLFGYESLDSSNSDSTNLFQDESKPEIIGDGEIMPFSLLEKWLLDDGGIQEKVGLSEINYVF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0344 334 CDD SANT 69 112 IPR001005 -
Tpr2g0344 334 CDD SANT 16 61 IPR001005 -
Tpr2g0344 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tpr2g0344 334 Gene3D - 13 66 - -
Tpr2g0344 334 Gene3D - 69 131 - -
Tpr2g0344 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tpr2g0344 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 328 - -
Tpr2g0344 334 SMART sant 66 114 IPR001005 -
Tpr2g0344 334 SMART sant 13 63 IPR001005 -
Tpr2g0344 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr2g0344 334 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 328 - -
Tpr2g0344 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr2g0344 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr2g0344 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr2g0344 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0344 Tpr-Chr2 4125150 4127689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0344 1 328 MYB Transcription Factor Family AT5G62470 49.730 6.99e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g0344 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0344 K09422 - gmx:780542 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0344 2 4125150 4127689 Tpr6g3687 6 40620143 40622063 PCT