Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0343 ATGAGGAAGAGACAAGTAGTTGTGAGAAGAACAGAAGATTCATCACAAAGAAGTGTGGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTTATGGCAAGTAGTGAAGAAGGTACAAATGGTGCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAAACTGTTTCTGAGTGTTCAAATGGTACTTGA 258 0.3953 MRKRQVVVRRTEDSSQRSVVKYGECQKNHAANVGGYAVDGCREFMASSEEGTNGALTCAACGCHRNFHKRELVETETVSECSNGT* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0343 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 82 - -
Tpr2g0343 85 PANTHER BNAA09G44460D PROTEIN 13 82 - -
Tpr2g0343 85 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Tpr2g0343 85 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Tpr2g0343 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0343 Tpr-Chr2 4101424 4102231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0343 1 83 Zinc finger-homeobox gene family AT3G28917 62.105 3.58e-33 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr2g0343 ZF-HD_dimer 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0343 - - lang:109339447 137.887