Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0342 ATGATGGAGGTTTTAACAACAACAACCACCACAAACACAAACACAATCATTACTCCATTAACAAATTCAAAACCACAAGAACCCGAATCAGAAAACCCGACCCGAATTCAACAACCCATAACCTTAAACATAACAAAGCCTTTGTCTTTTTCAAATGGTGTTCTTAAACGCCACCACCCAAACACTCATAACCACCATAACAACCACCACCACAACAACAATAACAATAACAACAACGTTGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACTTTAGGTGGTCATGCACTTGACGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGATGACCCTGCTTCCATAAAATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATATCAACCACATCACCGCCACCATCCACCACCGCCGCCGTTGTTTCAATCCCGTTCACCAAGCTCCCCGTCACCACCTCCGATCTCATCATACCCATCAGCTCCTCATATGCTTTTAGCACTCTCCAGCGCCGGAGTTGGACTCTCAATTCCGCCGGAAAACACAGCAGCACCGTTAAACCTTAGTTCTCCGATGGGTACTAGTAGAAAAAGATTCAGAACGAAATTCACACAAGAACAAAAGGAAAAGATGCATGAATTTGCTGAAAAAGTTGGGTGGAAGATGCAGAAAAGAGATGAAGAAATGGTGAATGGATTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTTAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTAACAGATCATGTTAATGGTAACGGCGCCGCCGCCGTGGGAACCGCCGTTGACGGTGGCTCCGGTGGTGGTTTTAGTGTTCATGAGAATGAGAATAATGGGACTAATGTTGCTGCCTGTGGTACTACTAATGGGTCTTCTTCTTCTTCTTGA 981 0.4424 MMEVLTTTTTTNTNTIITPLTNSKPQEPESENPTRIQQPITLNITKPLSFSNGVLKRHHPNTHNHHNNHHHNNNNNNNNVVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSSAGVGLSIPPENTAAPLNLSSPMGTSRKRFRTKFTQEQKEKMHEFAEKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLTDHVNGNGAAAVGTAVDGGSGGGFSVHENENNGTNVAACGTTNGSSSSS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0342 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 84 135 IPR006456 -
Tpr2g0342 326 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 281 - -
Tpr2g0342 326 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 271 IPR006455 -
Tpr2g0342 326 Pfam ZF-HD protein dimerisation region 82 136 IPR006456 -
Tpr2g0342 326 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 83 135 IPR006456 -
Tpr2g0342 326 SUPERFAMILY Homeodomain-like 205 275 IPR009057 -
Tpr2g0342 326 MobiDBLite consensus disorder prediction 147 174 - -
Tpr2g0342 326 Gene3D - 205 274 - -
Tpr2g0342 326 MobiDBLite consensus disorder prediction 153 174 - -
Tpr2g0342 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0342 Tpr-Chr2 4062896 4064262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0342 2 270 ZF-HD Transcription Factor Family AT5G15210 50.903 2.16e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr2g0342 ZF-HD_dimer 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0342 - - gmx:100814730 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0342 2 4062896 4064262 Tpr2g0342 2 4062896 4064262 ECH
Tpr2g0342 2 4062896 4064262 Tpr6g3163 6 34159237 34160873 PCT