LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g0312	ATGGATGGCTCTGGTGGTGGAAATGTGAACACGGTTCTACAACATTATAAAATGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAAGTAAAAATTGCAGAGCATGTATTGACTGGTCATAAAGTTGCCATCAAGATTCTTAACCGCCGCAAGATAAAGAATATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGATTGTTCATGCATCATCACATTATACGCCTTTATGAGGTTGTAGAAACGACAACAGACATATATGTGGTGATGGAATATGTGAAATCTGGAGAGCTTTTTGATTACATAGTAGAAAAAGGTAGGTTGCAAGAAGACGAAGCTCGCAGTTTCTTCCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGGGACCTGAAACCTGAGAATTTACTTTTGGACTCAAAATGGAGTGTCAAGATTGCTGATTTTGGCCTAAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCTAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTATATGCTGGACCGGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAATATCCCCAACCTCTTCAAAAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCTAGGCTGCTTGTGGTGGATCCCATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTGCCACGTTATTTGGCAGTGCCACCACCAGATACACTGCAACAGGCCAAAAAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAGGGAACAATTGATTGCGTCCCTTAGAAGCAGGGTGCAAAATGAGGGTACTGTAACTTATTATTTGTTATTGGACAATCGTTATCGTGTTTCCACTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGACTCTAATTTGAACCGTATCCACTCCAGTGAAGTTGCTTCTCCAGTTGGTGGGCACCGTTTTTCAGGGTATATGGATTATCAAGGAGTAGGAATGAGGCAACAATTCCCTGTGGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCAACCTCGTGAAATAATGGCCGAAGTCCTTAAAGCTCTGCAAGAACTGAATGTCTGTTGGAAAAAAATTGGACACTATAACATGAAGTGTAGATGGGTTGTGGTCATCCCTGGTCATCATGGAGGAATGGTTAACAATTCTGTGCATGGTAATAATTACCTTGGAGATGCCAGCATTATTGAGAATGAAGCTGCTGCTAAGTCAAGTGTAGTCAAGTTTGAACTACAGCTCTACAAAACTCAGGAGAAATATCTGCTTGATCTCCAAAGGGTTGAGGGTGCCCATTTTCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCGCAGCTTCGTGTTCTTTAG	1530	0.4222	MDGSGGGNVNTVLQHYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHHHIIRLYEVVETTTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFQVHLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDREQLIASLRSRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDSNLNRIHSSEVASPVGGHRFSGYMDYQGVGMRQQFPVERKWALGLQSRAQPREIMAEVLKALQELNVCWKKIGHYNMKCRWVVVIPGHHGGMVNNSVHGNNYLGDASIIENEAAAKSSVVKFELQLYKTQEKYLLDLQRVEGAHFLFLDLCAAFLAQLRVL*	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g0312	509	Pfam	Protein kinase domain	16	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g0312	509	SUPERFAMILY	Protein kinase-like (PK-like)	13	284	IPR011009	-
	Tpr2g0312	509	PANTHER	SERINE/THREONINE KINASE	8	508	-	-
	Tpr2g0312	509	ProSiteProfiles	Protein kinase domain profile.	16	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g0312	509	CDD	AMPKA_C	386	506	-	-
	Tpr2g0312	509	Pfam	Kinase associated domain 1	467	508	IPR001772	-
	Tpr2g0312	509	SMART	serkin_6	16	268	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g0312	509	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	135	147	IPR008271	GO:0004672\|GO:0006468
	Tpr2g0312	509	SMART	uba_6	291	328	IPR015940	-
	Tpr2g0312	509	ProSiteProfiles	Ubiquitin-associated domain (UBA) profile.	289	329	IPR015940	-
	Tpr2g0312	509	CDD	STKc_AMPK_alpha	15	268	-	-
	Tpr2g0312	509	Gene3D	Kinase associated domain 1, KA1	392	507	-	-
	Tpr2g0312	509	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	8	508	-	-
	Tpr2g0312	509	ProSitePatterns	Protein kinases ATP-binding region signature.	22	45	IPR017441	GO:0005524
	Tpr2g0312	509	CDD	UBA_SnRK1_plant	290	330	-	-
	Tpr2g0312	509	Gene3D	Transferase(Phosphotransferase) domain 1	7	349	-	-
	Tpr2g0312	509	SUPERFAMILY	KA1-like	325	508	IPR028375	-
	Tpr2g0312	509	ProSiteProfiles	Kinase associated domain 1 (KA1) profile.	461	508	IPR001772	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g0312	Tpr-Chr2	3783347	3790105	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g0312	16	268	CBL-interacting serine-threonine protein kinases	AT4G24400	51.575	2.30e-91	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_AMPK	Tpr2g0312		Pkinase	2.3e-79	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g0312	K07198		-	gmx:547544	911.753