Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0297 ATGGAATCACAAATTAAAAAAGCTCAAGTTATCAAAGTTATCGGACGTACTGGATCACGAGGGCAGGTCACTCAAGTTAGAGTGATGTTTACGGATGATCAGAATCGCCAAATCATGAGGAACGTCAAAGGACCTGTGAGAGAAGGAGACGTTCTCACCCTACTTGAGTCCGAGAGAGAAGCAAGAAGACTCCGATAG 198 0.4444 MESQIKKAQVIKVIGRTGSRGQVTQVRVMFTDDQNRQIMRNVKGPVREGDVLTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0297 65 Pfam Ribosomal protein S28e 4 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tpr2g0297 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Tpr2g0297 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tpr2g0297 65 SUPERFAMILY Nucleic acid-binding proteins 2 65 IPR012340 -
Tpr2g0297 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tpr2g0297 65 Gene3D - 1 65 IPR012340 -
Tpr2g0297 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Tpr2g0297 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0297 Tpr-Chr2 3692892 3694608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0297 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 83.077 2.47e-32 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0297 K02979 - egt:105950868 89.7373