Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0293 ATGGCGACTGCGAAACCTCAACGAACTCCACAAGAAGTGGAAGACATCATCATCCGCAAAATCTTTCATGTAACCATCACCGGAGAATCAACAACCACCACCGGAGTAACCGATTCGAGAATCGTTTATCTCGAACTAACCGCCGCAGAGATTCTCAGCGAAGGAAAAGACCTTCTCCTTTCTCGTGATGTTATGGAACGAGTCCTAATCGATCGTCTTTCCGGCGATTTCCCCACCGCCGGTGCCGAAAACTCACCGTTTCAGTATCTTCTCGGTTGTTACAACCGAGCTCACGATGAAGGGAAGAAAATCGTGAACATGAAGGATAAAAACCTTAGGTCAGAGATGGAAACTGTTGTGAAACAAGCGAAGAAGCTTTGTGTTTCGTATTGTAGAATTCATCTCGCGAATCCTGAGCTATTCGCGAGTCAGAATTCAAATTCCGGCACAGGAAAGTCGCCTCTGTTGCCGTTGATTATATCGGAGTGTGGTGGAGGTGGTGGAATGGGGGTTTTCGGTAGTGGTAGTGATACTGGAGGAGTGAAAAGTCCTCCAGGGTTTTTAGATGAGTTTTTTAGGGATCCTGATTTTGAAAGTTTGGATAGAATTTTGAAAGGGTTGTATGAGGAATTAAGAGGGAATGTGGTGAAAATTTCGGTTCTTGGAAATTTTCAGGATTCTCTTAGGGCTTTGTTGTTTTTGGTTAGGTTACCTGTTGGTGCTAAGTCTCTTGTGAGTCATGAATGGTGGATTCCTAAAGGTCTTTATATGAATGGTCGAGCTATCGAAATGACTAGCATTTTGGGTCCTTTTTTCCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAAGAGTAATCCGGATATTGGGCAGCAGTGCTTTTCTGATGCATCAACTCGGCGGCCATCTGATTTATTATCTTCATTCACGACCATTAAAAATGTCATGAATACCTTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGACACTCGTGAAAATGTACTTGAGTATCTTGCAGAGGTGATCAATCTAAATGCATCCAGGGCCCATATACAGGTTGACCCGATTACTTGTGCAAGTTCAGGAATGTTTGTAAATCTCAGTGCAGTCATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATCTAACAAAAAGGGATAAAATTGATGCCAAATATGTACACCACGCAAACCGTTTGAAGCTAAGTGGTTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTACTGAATGGCTTGATAGTAAAAACCCAGCTAAGGAAGGGGAAATGATTCAATGTAATGATGGTGAGAAACGTCTGAAACAATCTCAAGAGGCCACCAGTTCTGGTAGTAATAATGCCAGTGCAAAATATTCATTTATATGTGAATGCTTTTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAGGATACTCTTGCCACACTTAAAAACATGCAGGGACAGTCACCTTCTCCTCAATTGGAATTGGATATAACTCGACTTGAGAAAGAACTTGAGTTGTATTCACAGGAAAAACTTTGTTATGAAGCTCAGATATTAAGGGATAACACATTTATTCAGAATGCACTTTCGTTCTACCGCTTGATGATTGTCTGGTTGGTTGGCTTGGTTGGCGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTCGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCATCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTACGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTACGACAAGTTTAACATCCGCCATAATATCGCTGAACTCCTTGAATACCTGTGGAATGTCCCCAGTCATCGTAGTGCTTGGAGACAGGTAATACATGAAAGACATTTGAATTTTTTATCTCTCACGATACTCTACTGCATTCAGTTTTTGCTGAACTTAATTTTGTTACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTCATTAATGATAGTATTTATCTTCTCGATGAAAGTTTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACTGCCGAATGGGAGCGGCGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCCAATGAAGATGTCAGTATGCTTGCATTTACTTCCGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATCGAGTGGCCAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGGCCCCAAAGAAAATCACTCAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTGACTAGAGGTGACACAAATTCTATCTTCCCGTCTGCCATATCAAAGGATGGCCGATCATACAATGATCAGTTGTTTAGCTCTGCTGCAGACGTCCTTCGTAGAATTGGTGAGGATGCAAGAATCATACAGGAATTTATTCAGCTCGGTGATAAGGCCAAAGTTGCTGCTTCAGAGGCCTTGGATGCTGAAGCTACTCTCGGAGAAATACCAGATGAATTCCTGGATCCAATTCAATATACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAAGACCACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTACTGATCCATTCAACCGTTCTCATCTGACCGCCGATATGCTAATTCCTGATGTTGAACTCAAAGCAAGAATTGAAGAGTTTATCAGGTCTCAGGAAATGAAGAAACACAGTGAAAGCCTAAGTATGCAAAGTAATAAGGCCACCATTCAACCCACAAATGCTGATATGTTGATTGATTAG 3192 0.417 MATAKPQRTPQEVEDIIIRKIFHVTITGESTTTTGVTDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGDFPTAGAENSPFQYLLGCYNRAHDEGKKIVNMKDKNLRSEMETVVKQAKKLCVSYCRIHLANPELFASQNSNSGTGKSPLLPLIISECGGGGGMGVFGSGSDTGGVKSPPGFLDEFFRDPDFESLDRILKGLYEELRGNVVKISVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGLYMNGRAIEMTSILGPFFHISALPDQTFFKSNPDIGQQCFSDASTRRPSDLLSSFTTIKNVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHANRLKLSGLTALHASSEEVTEWLDSKNPAKEGEMIQCNDGEKRLKQSQEATSSGSNNASAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKNMQGQSPSPQLELDITRLEKELELYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFSAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRSAWRQVIHERHLNFLSLTILYCIQFLLNLILLQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLTRGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDARIIQEFIQLGDKAKVAASEALDAEATLGEIPDEFLDPIQYTLMKDPVILPSSKTTVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHSESLSMQSNKATIQPTNADMLID* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0293 1063 CDD RING-Ubox_UBE4A 967 1035 - -
Tpr2g0293 1063 ProSiteProfiles U-box domain profile. 964 1038 IPR003613 GO:0004842|GO:0016567
Tpr2g0293 1063 Coils Coil 515 542 - -
Tpr2g0293 1063 Pfam Ubiquitin elongating factor core 268 948 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Tpr2g0293 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 964 1043 IPR013083 -
Tpr2g0293 1063 PANTHER - 1 738 - -
Tpr2g0293 1063 PANTHER - 747 1041 - -
Tpr2g0293 1063 PANTHER UBIQUITINATION FACTOR E4 1 738 IPR045132 GO:0000151|GO:0030433|GO:0034450
Tpr2g0293 1063 PANTHER UBIQUITINATION FACTOR E4 747 1041 IPR045132 GO:0000151|GO:0030433|GO:0034450
Tpr2g0293 1063 SUPERFAMILY RING/U-box 957 1036 - -
Tpr2g0293 1063 Pfam U-box domain 965 1036 IPR003613 GO:0004842|GO:0016567
Tpr2g0293 1063 SMART Ubox_2 968 1031 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0293 1 1063 U-box Gene Family AT5G15400 74.212 0.0 1606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0293 K10597 - gmx:100806175 1719.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0293 2 3660730 3668200 Tpr2g0293 2 3660730 3668200 ECH