Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0272 ATGGATTTCAACACCCCAATACGATCCAACACCACGCCCCTCTCCAATCCAGTCTTCAAATCTAAACTCATTATCTTAAACGAATGGTGGCTCATGAAGCCTCAAAACCAGTGCAAGGGTTTAGCTCTTGCTGGCATTGCTTCAATGGAGAGAGAAAGAATGTTTCTATCTTCTGTGATTGTAAAGAGGCATGAACCCAATGTTGTAGAGACTGAAGATGGCATCACAATAATCTTCCGTGGTTTTATTAACTCCTCTCGTACATCTCAAAATGGATTTTCCTCTGATGTATGTCGCCGGTTCTTAGTTGGATTTCCACACAATTGGAAAAATTATTTTGTTCATAGTTCAGGAAATGAATGTCAATATGTGGATAAAGTTACCGGTTTTGATGACTCAAATGCTTCTTCCCACAAAAAAACAGCTGATGAGAATTCACAGGAAGTTATGGAAGCTGAAGATAATGGAAATATTGTGAGTATTAGGTTGCCTCAACCGCAGGTTGGCATGGTTGATAATGGTGAAAATGTAGTCTCAGATGTTAACGAATTACATGCTTCTTCCCACCTAAAAACAGCTGATGTGGCTTCGCATGAAGCTATGGAAGCCGAAGATAAAGACAATATTGCGAGTCTTAGGTTGTCTCAACCGCTGGTCAACGTGGGTTATAATGGTGAAAATAGAGTCTCAGATGTAGACGACTTGAATGCTTCTTTCCACAAAAACACAGCTCATGTGATTTCACATGAACCTATGGTAGCTGAAGCTAACGTCAATATCGGGAGTCTTAGGTTATCTCAACCGCAGGTTGATTTGATTAATAATGGTGAAAATGGAGTCTCAATTGTTGCAGCAGCTGAAAGTAGACAATCTTTGATGAGTGTGTTTGAATTTGATCCTATTCATGAGCAAAGCAATGTTAGGTCTCCACTTAACCCAAAGAAATTGGAATTTGAACAGTTATCAAGTGACCGCAAGGAGAAAAAACGTATCAAGAAGAAGATTGTAGAGGGTACAAGTAGTTTGTGTAAAAAGGTGCTGACAAGAAGCATTGCCAAAAAAAGCCACATGATGCTTAAAAGGGATGTGAAAGCTGAAGTAAAATGTTCTAGTAGTCCTGTTAGAAGATCTCCCAGGGTACTTAATTATGGAAAAAAAATTAGCTATTTGGATTTTTTTGAAGATTTGGATTTTTTTTGA 1200 0.3858 MDFNTPIRSNTTPLSNPVFKSKLIILNEWWLMKPQNQCKGLALAGIASMERERMFLSSVIVKRHEPNVVETEDGITIIFRGFINSSRTSQNGFSSDVCRRFLVGFPHNWKNYFVHSSGNECQYVDKVTGFDDSNASSHKKTADENSQEVMEAEDNGNIVSIRLPQPQVGMVDNGENVVSDVNELHASSHLKTADVASHEAMEAEDKDNIASLRLSQPLVNVGYNGENRVSDVDDLNASFHKNTAHVISHEPMVAEANVNIGSLRLSQPQVDLINNGENGVSIVAAAESRQSLMSVFEFDPIHEQSNVRSPLNPKKLEFEQLSSDRKEKKRIKKKIVEGTSSLCKKVLTRSIAKKSHMMLKRDVKAEVKCSSSPVRRSPRVLNYGKKISYLDFFEDLDFF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0272 399 PANTHER MIS18-BINDING PROTEIN 1 9 232 IPR039110 -
Tpr2g0272 399 PANTHER MIS18-BINDING PROTEIN 1 236 384 IPR039110 -
Tpr2g0272 399 Pfam SANTA (SANT Associated) 24 112 IPR015216 -
Tpr2g0272 399 PANTHER TRANSCRIPTION REGULATOR OTHERS FAMILY-RELATED 9 232 - -
Tpr2g0272 399 PANTHER TRANSCRIPTION REGULATOR OTHERS FAMILY-RELATED 236 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0272 Tpr-Chr2 3414661 3420751 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr2g0272 SANTA 7.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0272 - - mtr:MTR_5g040080 448.743