Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0234 ATGGAAGCAGAATATGGGAAGTTTCTGGATGAATATGCAAAAAATTATGACTCTTACGATGGTCAAGGATCAAATCAGACTAATCATGACATATCCCCTATTGATAACAATATAGAACCATGTCTTGAAAATTTCTACGGTCAAACATTTGGTAGATTGTCAATTAGTGGTCAACTAATACAATCATATGTTTTTGAATTGACACTTGCTCAACTAAACAAGGCAACAAAGACACAATTTACACTACCTTCTGAATTTAGCAATTATGTAAGGCAATACAATTTTCATAAGCTGGTTCTACAAGTACCAAACAAGAGCAGTTCAATTGTTCACTTAAAATATCCGGAAAATCATTCGGAGAATGTCAGAATTGCAAGAGGATGGAAAAATTTCTGTTTGGCCAACAATATTGAATTAGGAGATAGAATAAGTTTTGAATTCAAAGATATAAACTTAAATGTTTGTCAGGTTTCCATAGTTTAG 483 0.323 MEAEYGKFLDEYAKNYDSYDGQGSNQTNHDISPIDNNIEPCLENFYGQTFGRLSISGQLIQSYVFELTLAQLNKATKTQFTLPSEFSNYVRQYNFHKLVLQVPNKSSSIVHLKYPENHSENVRIARGWKNFCLANNIELGDRISFEFKDINLNVCQVSIV* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0234 160 CDD B3_DNA 65 151 IPR003340 GO:0003677
Tpr2g0234 160 Pfam B3 DNA binding domain 65 148 IPR003340 GO:0003677
Tpr2g0234 160 ProSiteProfiles B3 DNA-binding domain profile. 65 160 IPR003340 GO:0003677
Tpr2g0234 160 SUPERFAMILY DNA-binding pseudobarrel domain 63 155 IPR015300 -
Tpr2g0234 160 Gene3D - 61 160 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0234 Tpr-Chr2 2988775 2989424 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr2g0234 B3 2.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0234 - K17570 pvu:PHAVU_010G047200g 43.1282