Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0230 ATGGAGGGGATTAAAAAGAAATCAAAGCTTGGATCTACTACCTTGGAGGTAGGAAAAAAGAAAACTCAGGTTTCTCAGATTGATGGAGGATCTAAGAAAACTCAGGTTTCTCAGATTGACGGAGGATCTAAGAAATCTCAGGTTGCTCATATTGACGGAGTAACTAAGAAAACTGAAATTGGGGGTAATGATGGAGGAACTAAGGTGGATGATGTAAATAAGAAATCTCAGGTTACTCAGAGGGAGGATGGAACTAAGGAAAATAATACTGCTGAAGCTGTAGAAAGTCAAGAGGCATGCAAAGTTACAGAAATGGAAGAAGGCTCTAAGGAAACAAATTATATTGAGTATGATTATGATTCTATTAAAGATATCACTAAGAAGAAAGAAATTTGGAGACTAGGAGTGATTTTGGATGATATGTGGATTGTGTCCAAAGGAGAAAATGATGTGACCTTGGAAATGTTGCTAAGGGATTTAAAGGGATACACAATCCAAGCTACTGTGATGACTGACGACATTGTAAAGTGGAAAGATGAACTAACACCTGGAAATACATATTATATGCGAAACTTTAAAGTCGGAGACAATGATGCACAGTATAAAATGACTCCCCACAAATTTCGCTTAACATTTGTTGGTGCAACAAGAGTTAATGCAGTTGAAATTCCTGGAATTCCAAAAACACATTTTTATTTTAAGGACTTTGAAGAGATATCTAATGGGAAGTTTCGCACTGATATGTTAGTTGATACTATAGGAGTTGTTAACTCTATTGGGAAGACTGTTATTGCCACTACAACAAGGAAAGCTAACATTGCTTTTACCATCAAAGATCTACGTGATAAGGAACTTGATTGTACTTTGTGGGATACTTTATCTGAACAATTTTTCAATGGTTACAACCAACAATCCAACAATGGTCCTGTTGTCATTATTTTGCGACATGTCCGAATCAGGGAAGCTCAAGGACAATATCCACTGCAACTCACAAATGTGTGGAATGGAACCAAGATTCTATTTGATCCATCAATTCCTGAAATTGAAAATTTCCGTCGCAGTTTGCCCAATGACAACATCTATCCGTCTCAAAACATTACTTTTTCAAATTCTACACAATTCTACACCCAAAGTTATGGTGGATCTCAATACAATTCTGATGAAACCTTCATGAATCATGCCCATGTTCTTTCATTGGGAGCTATGAAAAAACTTAAAAAGGAGACATATTGTGTCACGGTTGTTACCACTTCACACATTAGAGTTTCTAATGGAGGTTGGTTTTTCTATGGTTGTCATGATGGTGAGAACGACTGCTCTTTAAAATGCGAGGGAAGTGAACTCCCATTTGTATGTCGAAAGTCACACTTCACAACTGATCCTCTAATCAAGTACAAGTTGGATGTTGAAGTATATGATGGTGATGATACAGCCAAGTTTGTTTTTTGGGACAGTACTCTTAACGAATTGGTTGGCCTCAATGCAAAGACTTTACTTGATCACGAAAAGAAGAATGGTTATGGCGACCCACAAGAATACCCTCGCCATTTTGATGCTCTCATGGAACGCAAGTTTGCTATTAGAGTCAAGTGGCAAGTTGGATGGGGAGGAATGGGATCTGTTCTCATGTGTAAGGATAGTCCTGAATTGATTGCCAGAATTCAGGAGCAGCTACCAATTGCTGAGAGTTCATGCAAGGACATTCGGTCTATTGATTCTATTGAGGAAGAACTTTGTGGAATTTCTGAATCACCTACAATTCAGGTGTTTACACAAGATGATATTGATCAATTTTCACGGCTAGATGATGGAATTATGTCAACTCCGAATGTTTCTGGATCAGCGGAGAACGATATCTCTCCTTCATCACAAAAAACTCCTGCCAAAAGGACTGCATCAAAGGAACAACCAGCTGATTCTCTTAATGTTGATTCTCAGGCTTCATCAACCAGATCTGGCAAACTGATTAAAAAGGAGAAAATATAA 1986 0.3792 MEGIKKKSKLGSTTLEVGKKKTQVSQIDGGSKKTQVSQIDGGSKKSQVAHIDGVTKKTEIGGNDGGTKVDDVNKKSQVTQREDGTKENNTAEAVESQEACKVTEMEEGSKETNYIEYDYDSIKDITKKKEIWRLGVILDDMWIVSKGENDVTLEMLLRDLKGYTIQATVMTDDIVKWKDELTPGNTYYMRNFKVGDNDAQYKMTPHKFRLTFVGATRVNAVEIPGIPKTHFYFKDFEEISNGKFRTDMLVDTIGVVNSIGKTVIATTTRKANIAFTIKDLRDKELDCTLWDTLSEQFFNGYNQQSNNGPVVIILRHVRIREAQGQYPLQLTNVWNGTKILFDPSIPEIENFRRSLPNDNIYPSQNITFSNSTQFYTQSYGGSQYNSDETFMNHAHVLSLGAMKKLKKETYCVTVVTTSHIRVSNGGWFFYGCHDGENDCSLKCEGSELPFVCRKSHFTTDPLIKYKLDVEVYDGDDTAKFVFWDSTLNELVGLNAKTLLDHEKKNGYGDPQEYPRHFDALMERKFAIRVKWQVGWGGMGSVLMCKDSPELIARIQEQLPIAESSCKDIRSIDSIEEELCGISESPTIQVFTQDDIDQFSRLDDGIMSTPNVSGSAENDISPSSQKTPAKRTASKEQPADSLNVDSQASSTRSGKLIKKEKI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0230 661 MobiDBLite consensus disorder prediction 68 89 - -
Tpr2g0230 661 Gene3D - 375 534 IPR012340 -
Tpr2g0230 661 CDD RPA1_DBD_B_like 251 356 - -
Tpr2g0230 661 SUPERFAMILY Nucleic acid-binding proteins 231 361 IPR012340 -
Tpr2g0230 661 Pfam Domain of unknown function DUF223 154 249 IPR003871 -
Tpr2g0230 661 Gene3D - 120 222 IPR012340 -
Tpr2g0230 661 MobiDBLite consensus disorder prediction 610 652 - -
Tpr2g0230 661 MobiDBLite consensus disorder prediction 1 97 - -
Tpr2g0230 661 MobiDBLite consensus disorder prediction 15 44 - -
Tpr2g0230 661 MobiDBLite consensus disorder prediction 610 661 - -
Tpr2g0230 661 CDD RPA1_DBD_A_like 133 218 - -
Tpr2g0230 661 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 122 542 - -
Tpr2g0230 661 Gene3D - 225 361 IPR012340 -
Tpr2g0230 661 SUPERFAMILY Nucleic acid-binding proteins 406 533 IPR012340 -
Tpr2g0230 661 PANTHER REPLICATION FACTOR A 1, RFA1 122 542 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr2g0230 661 SUPERFAMILY Nucleic acid-binding proteins 117 219 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0230 Tpr-Chr2 2957111 2962083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0230 157 498 Core DNA Replication Machinery Family AT5G45400 21.751 3.41e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0230 - - lang:109343677 275.789