Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0211 ATGGGAAGAGGAAGAGTGGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTTACATTTGCAAAGAGAAGAAATGGACTTCTTAAGAAAGCTTATGAATTATCTGTTCTTTGTGAAGCTGAGGTTGCTCTTATTATCTTCTCCAATAGAGGCAAGCTTTATGAGTTTTGTAGCAGTCCTAGCATGCTCAAAACGCTTGATAGGTACCAAAAGTGCAGCTATGGAGCAGTAGAAGTCAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGAAACCTTCTAGGTGAAGACTTGGGTCCATTAGGTACCAAAGATCTTGAGCAGCTTGAGCGCCAACTTGATTCATCTCTCAAGCAAGTCAGGTCTACCAAGACCCAATTCATGTTGGACCAATTAGCTGATCTTCAAAATAAGGAGCACATGTTGGTAGAAGCAAACAGATCTTTGACCATGAAGCTGGAAGAAATGAATATTGATACAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGATCAAAGTATGGCATATGGTAATCATCAAAATGCTCACTCACAAAGCTTCTTCCAGCCTTTGGACTGCAATCCAACATTGCAGATAGGGACTGATTATAGGTACAGTCCAGTAGCTTCAGATCAGCTAACTGCTGCAACAACTCAAGCTCAACAAGTTAATGGATTTATTCCTGGATGGATGCTTTGA 756 0.4074 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEMNIDTRNQYRQTWEAGDQSMAYGNHQNAHSQSFFQPLDCNPTLQIGTDYRYSPVASDQLTAATTQAQQVNGFIPGWML* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0211 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 PANTHER MADS BOX PROTEIN 1 235 - -
Tpr2g0211 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Tpr2g0211 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr2g0211 251 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g0211 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g0211 251 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Tpr2g0211 251 Coils Coil 124 144 - -
Tpr2g0211 251 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 235 - -
Tpr2g0211 251 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0211 Tpr-Chr2 2757751 2765315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0211 1 251 MADS-box Gene Family AT5G15800 71.970 9.23e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g0211 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0211 K09264 - gmx:100785322 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0211 2 2757751 2765315 Tpr5g3108 5 53878229 53884529 ECH
Tpr2g0211 2 2757751 2765315 Tpr2g0211 2 2757751 2765315 ECH
Tpr2g0211 2 2757751 2765315 Tpr6g3014 6 32744934 32749761 PCT