Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0198 ATGTCTCGTTATCTTTCTTCAAATCCCTTCGCAACGCTTCTCTCAGATTCAGATTCTGACACTGACTCACTGAGTCAATTCGTCACCGATCTCTTCGAAAATCGTTCCCCTTCCGATCCCGCTTGTCCTTGGGAAGATGAAGATGATCCAATATACCTAAACCCTTTCTCCGTTCTCGCTTGCGATGAAGCTGAATCTCAACCACAACCAGAATTAGAATTAGAATTAGGGTTTGGTGATGAATATGAAAATGAAATTGATGATACTCAATATAATGATAATTATGATCAAGTTTTCGATTTTTCAGTGGGTGGTGTTGATGATGATTCTAGTGGGCTTAGGGTTGTTGAATTTGGTACTGATTCGGAATCGAGTGGGAATGATGATGAATTTGATTATAGGGGAGAGAATGATGATGGTGATGAGAGGGTTGGTGGAATTTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTAGAGGAGAGGGTGAATGAGGATGCAAATGAGATTGGAGAATCTTCTAGTTTGTTGATTGAAGATGAGGTTGATGTTGATGATGATCGGTCAGTGACATCGGGGTTTGAAGAGGAAGAAGAGGAACCGGGCGAAGAGGCGTTGAGGTATTTGGAGTGGGAGATTCTACTAGCTTTTAATAATTTAGAGAGGAGTGGTGGATTGGAACATGAAGATGAGAGTCTTAATAATTTGTATTTAGCTGTTCACGATAGTATTATATCGGGAAACAATGATTATGATGTTCTTTTTGGACAGTTAATGGAGAATGAGAGTGGTTTGAAGGGTAGTCCACCAGCGGCGAAGAGTTTCGTGGAGAATCTTCCTTTGGTGGAACTGACGGAGGAGGAGTTGAAAGAGAAGGATGTTGTGTGTGCTGTTTGTAAAGATGAGGTAATGGTTGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAGTATTCGTAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACAGATGATGCTGATTACGAGCAGAGTAAGATTCGTAGTGTGGCTGGTGATCTGTTGGAGTTTGCAACATAG 1122 0.4171 MSRYLSSNPFATLLSDSDSDTDSLSQFVTDLFENRSPSDPACPWEDEDDPIYLNPFSVLACDEAESQPQPELELELGFGDEYENEIDDTQYNDNYDQVFDFSVGGVDDDSSGLRVVEFGTDSESSGNDDEFDYRGENDDGDERVGGICWDSLCLEDHRSILNDWEEVVEERVNEDANEIGESSSLLIEDEVDVDDDRSVTSGFEEEEEEPGEEALRYLEWEILLAFNNLERSGGLEHEDESLNNLYLAVHDSIISGNNDYDVLFGQLMENESGLKGSPPAAKSFVENLPLVELTEEELKEKDVVCAVCKDEVMVEEKVRKLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDADYEQSKIRSVAGDLLEFAT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0198 373 SUPERFAMILY RING/U-box 292 352 - -
Tpr2g0198 373 SMART ring_2 305 345 IPR001841 -
Tpr2g0198 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 352 IPR013083 -
Tpr2g0198 373 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 2 372 - -
Tpr2g0198 373 CDD RING-H2_RNF126_like 305 346 - -
Tpr2g0198 373 Pfam Ring finger domain 305 346 IPR001841 -
Tpr2g0198 373 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Tpr2g0198 373 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0198 Tpr-Chr2 2571461 2573262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0198 220 360 C3H Transcription Factor Family AT3G02340 52.318 4.49e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0198 - - gmx:100812037 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0198 2 2571461 2573262 Tpr2g0198 2 2571461 2573262 ECH