Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0171 ATGAAAGAAGAATCTGATGAACCAATTCTTCCTCAATCTCACGCTTGTAAGGTTGAAGGTATGGATCGGGTGGTTGTGACGGTTACTGGTTACCATGGATCTGAGCGATTCAACCTTATTAAGCTGATTTCGAATGCCGGTGCTAATTATGTTGGGGATATGTCGAATTCAATAACGCATCTGGTGTGTTGGAAGTTTGAAGGTAGGAAATATAACATTGCCCGAAAGTTAGGAAAGCGTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCGGAAGATTCTTATATTTTGCAAAGTGGACATGAAGTTGGTCCATTGTTACTGGAAGTTCCAGTCACTGTTCAAGCAAGTAGTAGCAGGTTATGTGCTATTGAATCTGAAAGGCAAAATGCTGACTTCAGTTCTGGGGTCTGCGGAATTTCCGTTTTGGAAGATTCTTCTTTATTGAAAAAGCATGATGCGTCAAGTTCATATTCATCTATACTGTCAAGGAAAGGTAAAAGACACCGTGGTAATGATGTTATTACCACGGCTACTCATTCTCGTAAAGGAAGAAGGGTTATGAAAAATGATGGTGAAGGGGAGTCGAGCCATATAGTTTTGGATTTAAGCACAGACGACCAGCTTTGCAAAATGAATAGGCTAAACGCTGAAGCTGCAGCTACCTATACCCTGTCTAGCCATGTCAATATTGACAATATTCAAGAAAACAGTGAAGGATTTGATGCTGGACTATCTAGTCAAACTAGAACTATCGGTGGAAGTTCAGTTGGCATTGACCAGAGCAGAGATTCAAATCATATATCTGCTGTCAGAAGTTCAACTTTGTTAATAGAGGATCCCCTTCCTGTGACACAAAAGACAGTAGATTTATGTTCCAGTTCTGCTGAAAAGTTGACGGATGGTGATGTGGTTGATAATTTTGATGACTTACCTACTTCAAATGAGCTGTCATGCGTTATATGTTGGACAGATTTCAGTTCAACAAGGGGGGTTTTGGAGTGTGGACATCGGTTTTGTCATACATGCATCCAGGGTTGGGTTGCTTGCAAGAAAGCAGCGGGGAAAATTTCAAACTGTCCTTTGTGCAAGGCAATTATTACAAGGATCATGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGCATACTCCCAGACAATTCCATGTGTTAACATAAGCTCAGATATTCTTATCCCCATGGATCAAGAATTTCCAGACAATAACTTAGAGGCAGGTGCTTGTGTAATTTGCCGTGGTCGGGAACCTGAGGAACTACTCGAGAATTGCGATGTTTGTCGATGTCGAAGAATTCATTCCTATTGCTTGGACCCTCCTTTACTGCCTTGGACGTGCAGTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCGCTCATATTAG 1425 0.4182 MKEESDEPILPQSHACKVEGMDRVVVTVTGYHGSERFNLIKLISNAGANYVGDMSNSITHLVCWKFEGRKYNIARKLGKRIVNHRWVEDCIKEGRRVPEDSYILQSGHEVGPLLLEVPVTVQASSSRLCAIESERQNADFSSGVCGISVLEDSSLLKKHDASSSYSSILSRKGKRHRGNDVITTATHSRKGRRVMKNDGEGESSHIVLDLSTDDQLCKMNRLNAEAAATYTLSSHVNIDNIQENSEGFDAGLSSQTRTIGGSSVGIDQSRDSNHISAVRSSTLLIEDPLPVTQKTVDLCSSSAEKLTDGDVVDNFDDLPTSNELSCVICWTDFSSTRGVLECGHRFCHTCIQGWVACKKAAGKISNCPLCKAIITRIMKVEHAATTDQKAYSQTIPCVNISSDILIPMDQEFPDNNLEAGACVICRGREPEELLENCDVCRCRRIHSYCLDPPLLPWTCSSCKELRMLYRNRSY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0171 474 SUPERFAMILY BRCT domain 20 105 IPR036420 -
Tpr2g0171 474 ProSiteProfiles BRCT domain profile. 21 104 IPR001357 -
Tpr2g0171 474 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Tpr2g0171 474 SMART ring_2 326 370 IPR001841 -
Tpr2g0171 474 Pfam Ring finger domain 325 371 IPR001841 -
Tpr2g0171 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 473 IPR013083 -
Tpr2g0171 474 PANTHER F5A8.9 PROTEIN 18 471 - -
Tpr2g0171 474 Pfam twin BRCT domain 24 86 IPR001357 -
Tpr2g0171 474 ProSiteProfiles Zinc finger RING-type profile. 326 371 IPR001841 -
Tpr2g0171 474 SUPERFAMILY FYVE/PHD zinc finger 417 465 IPR011011 -
Tpr2g0171 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 396 IPR013083 -
Tpr2g0171 474 SUPERFAMILY RING/U-box 315 378 - -
Tpr2g0171 474 SMART BRCT_7 18 94 IPR001357 -
Tpr2g0171 474 Gene3D BRCT domain 18 103 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0171 Tpr-Chr2 2262845 2269129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0171 54 110 Core DNA Replication Machinery Family AT4G02110 46.552 1.58e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0171 - - cam:101495587 603.594