Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0124 ATGCGAATGAGTTGTAATGGTTGTAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTAGCATAAGACCATGTTTGGATTGGATTAAGTGTCCTCAATCACAAGCTAATGCAACTCTTTTTCTTGCTAAGTTTTATGGTCGTGCTGGTCTCATTAATCTCATCAATTCTGCTTCTGAAAATCATCGTCCAGCAATTTTTAGATCATTGCTACATGAGGCTTGTGGGAGGATTGTGAACCCGGTTTATGGTTCAGTGGGTCTTCTATGGTCTGGTAGCTGGCAGCTCTGTCAAGCCGCTGTTGAAGCTGTGTTAAAAGGCGAGCCGATTACTCCGATTGCTTCAGAGGCTACACATGGCCCACCTTTCAAGGCCTATGACATACGCCACGTGGCGAAAGATGATAACTTGGATGAGACTCATCGAGTTAAGACTCGGTCGCAGCTCAGACGAGCCGTGAAGCCAAAGCCAAGTAAGAAAACCGGTTCAGTTGAAGATGTGGACCGGTCTGAATCATCGCTTAGTCAACCGGGCAAGGATAGTGAGAGTGGGGTTTCGGTGGAAACTTCGATTCTTTTTCATGATGAACCGGAGTCGGAAGCTAAGATATATGGTCAAGCTGAGGATGGTATGAGTAATGAGGTTGGTTTGGAGCTTAGGCTTGGGTTCGAACCTGTTCACTCGCGCGAGCCATGTGAGGAGCACGTGGTTCCCATAAAGAAAAGAAAATTTAATTTGAAGGATTGTAATGCTTCTTGCAAAGTGGAGCTTGGGCTTGAGTTTGCGACTTAA 789 0.4525 MRMSCNGCRVLRKGCSEDCSIRPCLDWIKCPQSQANATLFLAKFYGRAGLINLINSASENHRPAIFRSLLHEACGRIVNPVYGSVGLLWSGSWQLCQAAVEAVLKGEPITPIASEATHGPPFKAYDIRHVAKDDNLDETHRVKTRSQLRRAVKPKPSKKTGSVEDVDRSESSLSQPGKDSESGVSVETSILFHDEPESEAKIYGQAEDGMSNEVGLELRLGFEPVHSREPCEEHVVPIKKRKFNLKDCNASCKVELGLEFAT* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0124 262 MobiDBLite consensus disorder prediction 145 186 - -
Tpr2g0124 262 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Tpr2g0124 262 MobiDBLite consensus disorder prediction 157 174 - -
Tpr2g0124 262 PIRSF AS2 139 262 IPR017414 -
Tpr2g0124 262 PIRSF AS2 1 164 IPR017414 -
Tpr2g0124 262 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 259 - -
Tpr2g0124 262 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 259 - -
Tpr2g0124 262 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0124 Tpr-Chr2 1730118 1731965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0124 1 258 AS2 family AT3G02550 53.309 9.85e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g0124 LOB 5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0124 - - aprc:113867933 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0124 2 1730118 1731965 Tpr2g0124 2 1730118 1731965 ECH
Tpr1g0294 1 2478336 2479723 Tpr2g0124 2 1730118 1731965 ECH