Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0107 ATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAAATCAAGAAGGACAACATTTCAAAAGAGAAAGAAAGGGTTAATCAAAAAAGTGGAAGAATTTGCCATTCTTTGTGATGTTGATGTGTGTTTAATTCTCTATGCTCCCAATTTCGAAGGTCAAGGATATGCTGAACCTGAAATATGGCCTAAAGAACCAAAAGTACGAAAAATCCTTCAAAAGTATTATAACACAACAAACGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTACAAAGAAAGGATGAAAAAAGTCGAATTCGAGATTTCCAAAGTGCGCAAAGAGATGTTAAAGATCATGTATCCAACTTGGGAAGAATCTTTCAATTCTCTTGGAGAGGAACAAATGAGGTTATTTGCTGGTCTATTGGATGCTAAGCTTGATGCTTGTAATCAAAAGATGAATATGCTAAAAGGAGATGTTAAGGGAAAAAGAATAGCTCATGAATCACACAAGGTTGATAAACCTAATATTCCCTATTTGACCTCAAATTCAAATACCTACTTCAATTTCATGCCAAACAACATGTCTCTACCACAAATTTACCCTCCATTGATGAACATTGCTGAAAAAAACCCGTTCGGGTTTTGGCCACTTCACCTCGGACAAAGCTCTCAACCTTCTTCAACGCTTTCTAGTGCACAAGGTTCGAACCAGATGGAGTTTGATGAAGGTAGATATGCACAGTCTTATCCCGGCAAGCAAGTCGATGCTAATTGGACTAATTGGACTAGTCAGATTGATGCTAATATTACCTATGATCCAAAAACTGGTACAAAAAAGAAGAATGGAGCTGAAAATGATGAGAATTTGTTACCATATTATTACAATGGAAATGCAATGACAATGCAATCATATCCTATTGGTATGCATACTCTTCCTTTCCAGAATCTTCAAAACCTACCACCACATGGATATCAATTTAATGGATTCTATGATATGGATATTCTTCAAGCTCATATGTTCAACAACTACATGGATGGAAGGAAGTAG 1041 0.3641 MGRGRISMELIQKEKSRRTTFQKRKKGLIKKVEEFAILCDVDVCLILYAPNFEGQGYAEPEIWPKEPKVRKILQKYYNTTNDRRPKIYDVQEYYKERMKKVEFEISKVRKEMLKIMYPTWEESFNSLGEEQMRLFAGLLDAKLDACNQKMNMLKGDVKGKRIAHESHKVDKPNIPYLTSNSNTYFNFMPNNMSLPQIYPPLMNIAEKNPFGFWPLHLGQSSQPSSTLSSAQGSNQMEFDEGRYAQSYPGKQVDANWTNWTSQIDANITYDPKTGTKKKNGAENDENLLPYYYNGNAMTMQSYPIGMHTLPFQNLQNLPPHGYQFNGFYDMDILQAHMFNNYMDGRK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0107 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 CDD MADS_SRF_like 2 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr2g0107 346 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 PANTHER MADS BOX PROTEIN 3 250 - -
Tpr2g0107 346 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tpr2g0107 346 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr2g0107 346 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Tpr2g0107 346 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0107 Tpr-Chr2 1494019 1495109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0107 1 125 Type I MADS-box Gene Family AT5G55690 42.520 1.68e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr2g0107 SRF-TF 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0107 - - mtr:MTR_1g114730 473.011