Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0087 ATGACTTCCCTTTCATGGTTCCTCATTCTTTTTGCTCTTTCTCTTCTTATCCCAAATTTTGTTTCATCCTCTGCAGTTCAAGATCCTAAACAAGTTGTACAAGATGTACAAAGGAGCATCAAGAATGCTACTAGGAGAAACTTGGGCTATTTATCATGTGGAACAGGAAACCCCATTGATGATTGTTGGAGATGTGAACCAAATTGGGAAAACAATAGACAAAGACTAGCTGATTGTGCAATTGGATTTGGCAAAGATGCAATTGGTGGTAAAAATGGTAAAATCTATATAGTAACTGATTCAGGTGATGATGATCCAGTTAATCCTATGCCAGGAACATTAAGATATGGTGCAATTCAAGATGAACCATTATGGATAATTTTCAAAAGAGATATGGTAATTACATTAAAACAAGAGTTATTGGTAAATTCATATAAAACAATTGATGGAAGAGGTGCTAGTGTTCACATAGCAAATGGGGGGTGTATAACAATACATTATGTTAATAACATTATAATACATGGTATTAATGTTCATGATTGTGTTCCAACTGGGAATACTAATATTAGAAATTCACCTGAACATAGTGGATTTTGGACAGTTTCAGATGGTGATGGAATTTCAGTATTTAATTCAAATAATATTTGGATTGATCATTGTTCTTTGTCTAATTGTCGTGATGGGCTTATTGATGTAATTCATGGATCAACAGCTATTACTATTTCAAATAACTATATGACTCATCATGATAAGGTCATGCTTTTAGGACATAGTGATTCTTATACACAAGATAAGGACATGCAAGTTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGTCCAAAGAATGCCAAGGTGTAGACATGGATATTTTCATGTGGTGAACAATGATTACACACATTGGGAAATGTATGCAATTGGTGGAAGTGCTAACCCTACAATCAACAGCCAAGGGAACAGATTCCTTGCACCAGACAACAGATTTAGCAAAGAAGTAACAAAACATGAAGATGGATCAGAGAGTGAATATAATAGTTGGAATTGGAGATCAGACGGTGATTTGTTCTTGAATGGAGCATTCTTTAGACAAACTGGTGCTGATGCTTCTTCTATCTATGCTAGAGCTTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGGTTCAATTACTACTACTTCTGGTGTTCTTAGTTGCAAGAAGGGCAACCTTTGTTGA 1218 0.353 MTSLSWFLILFALSLLIPNFVSSSAVQDPKQVVQDVQRSIKNATRRNLGYLSCGTGNPIDDCWRCEPNWENNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPMPGTLRYGAIQDEPLWIIFKRDMVITLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNIIIHGINVHDCVPTGNTNIRNSPEHSGFWTVSDGDGISVFNSNNIWIDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNRFSKEVTKHEDGSESEYNSWNWRSDGDLFLNGAFFRQTGADASSIYARASSLSARPASLVGSITTTSGVLSCKKGNLC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0087 405 PANTHER PECTATE LYASE 8 402 - -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Tpr2g0087 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Tpr2g0087 405 Pfam Pectate lyase 138 322 IPR002022 -
Tpr2g0087 405 Gene3D - 56 398 IPR012334 -
Tpr2g0087 405 SMART amb_all 131 328 IPR002022 -
Tpr2g0087 405 PANTHER PECTATE LYASE 18-RELATED 8 402 IPR045032 GO:0030570
Tpr2g0087 405 SUPERFAMILY Pectin lyase-like 57 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0087 Tpr-Chr2 1260416 1265036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0087 7 405 Polysaccharide Lyase AT5G63180 70.896 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0087 K01728 - gmx:100810380 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0087 2 1260416 1265036 Tpr2g0087 2 1260416 1265036 ECH