Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0076 ATGGGGAAGGAGAGTCAGAACCTCAAGGATTCCGCTGTTGCAGACAGTAACATGGTCGTAGGCAAAGAGACCGATTGCACAAGCGCCAATGCCTGTCCTGTTGGCCCTAGTCCGATGGAAATCAATGATGAATGTCAGACTTCAAATATTACCAATGAAGACAAACTTCATATTGATGTCGAAAGAGCACAGCTGTGTCAGAACCCCGATGCTACCTCTATATCAGTGACCGATACTGATGTAACAAATGAGGAGGAAATATATGTGGCACCAAATTTTGGCATGGAGTTTAAATCAGAAGAGCATGCTTACAAGTGTTATAACAATTATGCTGTTATGAAAGGTTTCAGCATAAGAAAGGATTTCATCAACAAAAGTAGGGTAGATGGTTCAGTGGTGTCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGGTCTAATAAAGATTATAAAAATCCGAAGAATATCCAGCAGGAAACAAGGACTGGTTGCTTGGCACATATGACTATTTCTCGTCAGCCAAATAGCAAGTTTCGTGTCACTAGTTTTGAAACAGAACACAATCATGAGTTTGTAACACCCTCTGATGCTCATATGTTGCCGTCACAGAAGAAATTGAGTTTTGCTCAAGCTGTCGAAGTGAACATCACTGGGTCCACTTTGGATGGGGTACCAAAATTGGGAATGGGATTTGATTCCGAGGAGCATGCATATGAATTTTATAATACGTATGCTGCACAAGTAGGCTTCAGTGTGAGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGCGCTGTAGCATCAAGAAGGTATACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGAGAAACGAGATAAGAATGTAAAGAGACCTCGGAAGGATACTAGAATTGGATGTTTAGCACAACTGATTATTTCTCGTCAGCCTGATGGCAGGTATCATGTAACTCATTTTGAAGAAAAACACAACCATGAGCTTGTTGCTGCATGTAGAGTCCATATGTTAAGATCACAGAAGAGATTAGCTGCAACTCGAGTTGAAGATAATATCGTAGCTGGATGCAGTGCGCTGCCAAAGCCTGCCTCTGCATCCAACTGCAGGACAGTTGAAGATTTTCATGATTTAGATTATGATCCTGTGGATTGTGAATATCAACTACCTTTCAAATGTACAAGAGAAATAAAAGAGGACGAAATCGAAAAGATTAGGCACTACTTTCAAAGCAAGAAAGCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCCACAAATCAAATAACTAATATCTTTTGGGCTGATGAAAAGATGATAGTTGACTACAGTGATTTTGGTGACGTTGTTTGTTTTGATACGAGTTATAAATTTTATAAGGACTCACGCCCGTTTGCTCCATTTCTCGGTATAAATAATCACAGGCAAATGAATATCTTCGGGGCAGCACTTCTATATGATGAATCTGTGGAATCTTTTAAGTGGCTGTTTCACGTTTTCATTGAGGCTATGTCTGGAACCAAGCCAAAGACAATCCTAAGAGACCAAGATGCAATAATAGCTGAAGCTATTAATTCCATATTACCTCAAACAAAGCAACGAGTTTGTGTTTGGCATGTCTACCAAGATGCCCTCAAGCAACTGAGTCATATGTCTGTTGAATCCGATTCTTTTGTAAATGATTTGAGCTGCTGCTTTTTTAATCACGAGGAAGAAGTGGATTTTATTGATGCATGGAATGCTCTCATGATCATTTATAATCTGTGGGACAACGAATGGTTGCGTCGAATATATGAAAGCAGAGACCAATGGGCCATAGCTTACAGAAGACACATTTTTTGTGCCGATATCGCAAGCTTGCTCATGCGAGAAAATCTTATTGGCAGCTTGAAAAAGCACCTAAAGAATGACTCAAGTGTTATTCCATTTCTCAAGCATCTTGGGAAGATGGTGACCGATTGGCACTACAAGGAATTAGAATCTAATTATGACACAAGCCGGCATATGCCAGCCCTAATGGGCGATATCGTTACACTAAAGCATGCAAGAGATCCATATACACCAAAGATATTTGAGTTATTCCAAAAAGAATATGAAGCATGTTTAAATCTAGTGCTAAAGCCTTGCAGTGAGAGTGGTTCGTTGTATAATTATAAAGTTAGCATATATGAACAAGTCCGAGAGTATATGGTTACTTTCGATTCGTCTAATGAGACTGTTAGTTGCAGCTGTATGAAGTTTGAGTGTGTGGGAGTCTTGTGCTGCCATGCATTAAAAGTTCTTGATTATAGGAACATAAGGATAGTTCCATCCAAGTATATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2352 0.3946 MGKESQNLKDSAVADSNMVVGKETDCTSANACPVGPSPMEINDECQTSNITNEDKLHIDVERAQLCQNPDATSISVTDTDVTNEEEIYVAPNFGMEFKSEEHAYKCYNNYAVMKGFSIRKDFINKSRVDGSVVSRRFTCHRQGFRSNKDYKNPKNIQQETRTGCLAHMTISRQPNSKFRVTSFETEHNHEFVTPSDAHMLPSQKKLSFAQAVEVNITGSTLDGVPKLGMGFDSEEHAYEFYNTYAAQVGFSVRKDYVNRSKVDGAVASRRYTCFREGFRQKEKRDKNVKRPRKDTRIGCLAQLIISRQPDGRYHVTHFEEKHNHELVAACRVHMLRSQKRLAATRVEDNIVAGCSALPKPASASNCRTVEDFHDLDYDPVDCEYQLPFKCTREIKEDEIEKIRHYFQSKKAKNPSFFYAFQLDATNQITNIFWADEKMIVDYSDFGDVVCFDTSYKFYKDSRPFAPFLGINNHRQMNIFGAALLYDESVESFKWLFHVFIEAMSGTKPKTILRDQDAIIAEAINSILPQTKQRVCVWHVYQDALKQLSHMSVESDSFVNDLSCCFFNHEEEVDFIDAWNALMIIYNLWDNEWLRRIYESRDQWAIAYRRHIFCADIASLLMRENLIGSLKKHLKNDSSVIPFLKHLGKMVTDWHYKELESNYDTSRHMPALMGDIVTLKHARDPYTPKIFELFQKEYEACLNLVLKPCSESGSLYNYKVSIYEQVREYMVTFDSSNETVSCSCMKFECVGVLCCHALKVLDYRNIRIVPSKYILKRWTKDARV* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0076 783 Pfam MULE transposase domain 448 541 IPR018289 -
Tpr2g0076 783 Pfam FAR1 DNA-binding domain 107 192 IPR004330 -
Tpr2g0076 783 Pfam FAR1 DNA-binding domain 239 327 IPR004330 -
Tpr2g0076 783 ProSiteProfiles Zinc finger SWIM-type profile. 728 764 IPR007527 GO:0008270
Tpr2g0076 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 219 783 - -
Tpr2g0076 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 46 208 - -
Tpr2g0076 783 SMART 26again6 739 766 IPR006564 GO:0008270
Tpr2g0076 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 219 783 IPR031052 GO:0006355
Tpr2g0076 783 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 208 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0076 Tpr-Chr2 1137584 1142770 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr2g0076 MULE 7.8e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0076 K17604 - gmx:102659753 1215.68