Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0052 ATGGAGAAACAAGAACCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGTGTGAGGCAGAGACCATGGGGTAAATGGGCAGCTGAAATAAGAGATCCTAACAAAGGAGCAAGAGTTTGGCTTGGCACCTTTGATACAGCTGAAGGTGCAGCAAGAGCTTATGATGAAGCTGCCATAAAGTTCAAAGGAAACAAAGCCAAAACAAATTTCCCTCAACCCGTTTCTCATTCGCCTTCAAATCCATCGCCACCGCGTAAAAACAATACTGCTTCATCTTCTTCTTCGCAGTTTGCTCCACCAAAATCTCATTTTCCGTTGTCAACAACGGAAGAAGTGTTCCCAAACCTAATGCAATATGCTCAAGTACTTTGTAGTAAGGACGACGAAGATCTTCGACGTGCTGCTTCAAGTCTTTACAATAATAGTTTTCACCATCACAACAATAACAATAATGAGCAATTTCGTTATTATAATTTGCCGCCATTCTTCTCAACACCATCAACAATGTCTCCGTCGTCTACTTCTAATGATGTTGTGCCTAGAGTTGGAGATCGTCGTGGTTTTGATGAAAGGAACGTGAGAGGATTATAG 606 0.4076 MEKQEPSQPTNQGNEKKKHYRGVRQRPWGKWAAEIRDPNKGARVWLGTFDTAEGAARAYDEAAIKFKGNKAKTNFPQPVSHSPSNPSPPRKNNTASSSSSQFAPPKSHFPLSTTEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNSFHHHNNNNNEQFRYYNLPPFFSTPSTMSPSSTSNDVVPRVGDRRGFDERNVRGL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0052 201 MobiDBLite consensus disorder prediction 171 201 - -
Tpr2g0052 201 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 MobiDBLite consensus disorder prediction 1 37 - -
Tpr2g0052 201 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 MobiDBLite consensus disorder prediction 69 111 - -
Tpr2g0052 201 MobiDBLite consensus disorder prediction 187 201 - -
Tpr2g0052 201 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 2 189 - -
Tpr2g0052 201 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 PANTHER DNA-BINDING DOMAIN 2 189 IPR044808 GO:0003700|GO:0009873
Tpr2g0052 201 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Tpr2g0052 201 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Tpr2g0052 201 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Tpr2g0052 201 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0052 Tpr-Chr2 676537 678529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0052 1 144 AP2-EREBP Transcription Factor Family AT5G13330 45.098 4.69e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr2g0052 AP2 4.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0052 - - mtr:MTR_6g033255 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0052 2 676537 678529 Tpr2g0052 2 676537 678529 ECH