Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4520 ATGTCTTTGCTACTTAAATTTCAATTATTAGGAATCATATTCACTATCATAACCCTTACAAAAGTTAGTTGCTTGTATTTCACTTTCCCAACCTTTCACCAAAACGATGCAAACAAATTGTTACTCAATAATTCATATATACAACGAGATGCCATACAAGTAACCCCAGAAAATAGCAAAGCTTCGATGTCGAATTTATCAGGACGTGCTTTATACAAAGATCCTTTCGAACTTGCTTCCTTCAACACCACTTTTGTTCTCAATATAACTCCTGACACTTCCCCTGGTGGAGAAGGCATAGCTTTTATTTTAGCTTCAGAACCAACTCTCCCTGAAAACAGTTCAGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCTCAAGCCGCAATTCTTGCAGTTGAGTTTGATACACGACAGAGTTCAATCGAAGACGGTCCAAACAACCATGTTGGAATCAATATAAACAGCATATCCTCCTTGAAACAAGTATCATTATCAAATACTAAGGTTAATCTTTCATCTGGTTTAGATGTATTTATAAGAATTGAATATTCTAATGATGTAATATCTGTTTTTGGTTCAATGACTGCAAATTCAAATGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCCTATTTTAAACAAGAGGTTTATGTCGGTTTCTCGGCTTCAACAAGCAATTACACAGAGCTAAATTGTGTAAAAGCATGGGAATTCAATGGTGTAGATATTGGTAATAAAAAAAATCTTTGGTGGATTTGGATTATAATTCCATTGGTCATAATCATAGCTGGATTAGTCCTTTTCATGGTATATTTTCTAAGGAAAAAAAACACGGACATTCCAGAAGATACGTATCCGAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACTGGTGGATTCAGCCTTCAAAACAAACTTGGTGAAGGTGGATTTGGAATGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGGTAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATTGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTAGTGAAACTCATTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTTGTTTACGAGTTTATGCCTCGGGGAAGTTTAGATAAATACTTGTTTAACCAATCAAGTGAATTAGAAGTACAATATTCAAAAGTACTTGATTGGAAAACAAGAAATGGCGTGATTCGTGATGTCGCCCAAGCATTGGATTATCTTCACAATGGATGTGAGAAAAGAGTACTTCATAGAGACATTAAAGCAAGTAACATAATGTTAGATATTTTTTACAATGGAAAATTAGGTGATTTTGGATTAGCGCGTACAATTCAAAAGAGAAATGAAACTCATCACTCAACAAAGGAAATTGCGGGGACGCCAGGTTATATGGCACCGGAAACTTTTCTAACAGGAAGAGCGACGGTTGAAACAGATGTGTATGCATTTGGTGTACTTGTTTTGGAAGTTGTGTGCGGAAAAAGACCCGGGAATATGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTATTAGCGCTGTGGATAAAAGGATAAGTTACGAAGAGAACGAGATTGAGAGGGTAAAATGGGAAGAAGAAGAAGAAGAAGAAGTTGATATTGAAAGGGTAAAATTGGAGGAAGAAATTGAAATTGTGCTTATTCTTGGGTTGGCTTGTTGTCATCCAAATCCAAATCAAAGGCCATCAATGAAAACTGTATTGATGGTTCTAAATGGTGAAGTTTCTCCTCCAAATGTTCCTTTGGAAAGACCTGCTTTTGTTTGGCCAGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGAACTCTCACTCCATTCACTCAACTTAGTGGAAGATAG 2019 0.365 MSLLLKFQLLGIIFTIITLTKVSCLYFTFPTFHQNDANKLLLNNSYIQRDAIQVTPENSKASMSNLSGRALYKDPFELASFNTTFVLNITPDTSPGGEGIAFILASEPTLPENSSGQWLGIVNASTNGTSQAAILAVEFDTRQSSIEDGPNNHVGININSISSLKQVSLSNTKVNLSSGLDVFIRIEYSNDVISVFGSMTANSNDSMETLLVSPPLNLSSYFKQEVYVGFSASTSNYTELNCVKAWEFNGVDIGNKKNLWWIWIIIPLVIIIAGLVLFMVYFLRKKNTDIPEDTYPRIEDQIQHSSMAPKKYQLKELMKATGGFSLQNKLGEGGFGMVYKGILGNNKEVAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYESKELLLVYEFMPRGSLDKYLFNQSSELEVQYSKVLDWKTRNGVIRDVAQALDYLHNGCEKRVLHRDIKASNIMLDIFYNGKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWELYGKGEIISAVDKRISYEENEIERVKWEEEEEEEVDIERVKLEEEIEIVLILGLACCHPNPNQRPSMKTVLMVLNGEVSPPNVPLERPAFVWPAMPSSFKEGEDNSLINGTLTPFTQLSGR* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4520 672 ProSiteProfiles Protein kinase domain profile. 324 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4520 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Tpr1g4520 672 Pfam Legume lectin domain 25 254 IPR001220 GO:0030246
Tpr1g4520 672 PANTHER - 9 570 - -
Tpr1g4520 672 PANTHER - 589 662 - -
Tpr1g4520 672 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Tpr1g4520 672 CDD lectin_legume_LecRK_Arcelin_ConA 25 249 IPR001220 GO:0030246
Tpr1g4520 672 Coils Coil 576 596 - -
Tpr1g4520 672 SMART serkin_6 324 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4520 672 Gene3D Transferase(Phosphotransferase) domain 1 400 631 - -
Tpr1g4520 672 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 570 - -
Tpr1g4520 672 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 589 662 - -
Tpr1g4520 672 Gene3D Phosphorylase Kinase; domain 1 298 399 - -
Tpr1g4520 672 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 249 IPR013320 -
Tpr1g4520 672 SUPERFAMILY Protein kinase-like (PK-like) 305 625 IPR011009 -
Tpr1g4520 672 CDD STKc_IRAK 330 627 - -
Tpr1g4520 672 Pfam Protein kinase domain 325 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4520 672 Gene3D - 23 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4520 Tpr-Chr1 53451381 53453827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4520 5 641 Receptor kinase-like Gene Family AT5G55830 35.683 1.67e-115 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g4520 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4520 - - gmx:100785031 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4520 1 53451381 53453827 Tpr1g4520 1 53451381 53453827 ECH