Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4519 ATGTCGAATTTATCAGGACGTGCTTTATACAAAGATCCATTCAAATATGCTTCCTTCAACACCACTTTTGTTATCAATATAACTCCTGTAACTTCCCATGGTGGAGACGGCATAGCTTTTATCTTAGCTTCAGATCCAACTCTCCCTGCAAACAGTTATGGAAGTTGGCTTGGTATTGTAAATGCTGACACTAATGGAACTTCTCAAGCCGCAATTCTTGCAGTTGAGTTTGATACACGACAGAGTTCAACCGAAGACGGTCCTGACAACCATGTTGGAGTCAACATAAATAGCATCTCCTCTTTGATACAAGTATCATTGATAAACACTAAGGTGAATCTTTCATCTGGTAAAGATGTAACTATAAGAATTGAATATTCAAATGATGTAATATCTGTTTTTGGTTCAATGACTGAATATTCAAATGTTTCAATGGAGACCCTTTTGGTATCTCCACCGCTTAATCTCTCTACCTATTTTAGACAAGAGGTTTATGTTGGGTTCTCTGCTTCAACAGGAAATTACACAGAGCTAAACTATGTAAGAGCATGGGAATTCAACGGCTTAGATATTGGTAATAAAAAAATTCTCTGGTGGATTTGGATTATAATTCCATCGGTCATAATCATAGGTGGATTAGTCTTTTTCTTCCTTTATTTTCAAAGGAAAAAAAACATGGAGCTTCAAGAAGATACATATCAAGGAATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGACGTATCAACTAAAGGAATTGATGAAAGCAACAGGTGGATTCAGCCCTCAGAATAAACTTGGCGAAGGTGGATTTGGAATGGTTTATAAGGGTATTCTTGGAAACAACAAAGAAATAGCTGTGAAGAGAGTCTCGAAAAACTCGCGTCAAGGAAAGCAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTGGTGAAACTCGTTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTCGTTTACGAGTTCATGCCAAATGGAAGCTTAGAAAAATATCTATTTAACCAATCAAGTGAATTAGAATTACAATATTCAAAAGTACTTGATTGGAAAACAAGAAATAACGTGATTCGTGATGTCGCCCAAGCACTGGATTATCTTCACAATGGTTGTGAAAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATTTTGGATTTAGAATACATTGCAAAATTGGGTGATTTCGGATTGGCGCGTACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCTGGAACACCGGGTTATATGGCACCAGAAATATTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTGTATGCATTTGGTGTTCTTATTTTGGAAGTTGTGTGTGGAAAAAGACCAGGAAATGTGTATGCACAAGATGATTATAATACAAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGTGTTGTAGATAAAAGGATAAGTTATGAAGAGAATGAAGTCGAGCGGGTAAACTGGGAAGAAGTTGAAACTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTATAAATGGAGAAGTTTCTCCTCCAAATGTTCCAATGGAAAGACCTGTTTTTGTTTGGCCTGCGGCTATGCCTTCATGTTTGAAACTTGGTGAAGATAGCTCTCTTATCAGTGGAACTCTCACTCCAATTACTCAACTTAGTGGTAGATAG 1788 0.3714 MSNLSGRALYKDPFKYASFNTTFVINITPVTSHGGDGIAFILASDPTLPANSYGSWLGIVNADTNGTSQAAILAVEFDTRQSSTEDGPDNHVGVNINSISSLIQVSLINTKVNLSSGKDVTIRIEYSNDVISVFGSMTEYSNVSMETLLVSPPLNLSTYFRQEVYVGFSASTGNYTELNYVRAWEFNGLDIGNKKILWWIWIIIPSVIIIGGLVFFFLYFQRKKNMELQEDTYQGIEDQIQHSSMAPKTYQLKELMKATGGFSPQNKLGEGGFGMVYKGILGNNKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLVGWCYESKELLLVYEFMPNGSLEKYLFNQSSELELQYSKVLDWKTRNNVIRDVAQALDYLHNGCEKRVLHRDIKASNIILDLEYIAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPEIFLTGRATVETDVYAFGVLILEVVCGKRPGNVYAQDDYNTSIVYWVWELYGKGEIVSVVDKRISYEENEVERVNWEEVETVLVLGLACCHPNPNERPSMKTVLMVINGEVSPPNVPMERPVFVWPAAMPSCLKLGEDSSLISGTLTPITQLSGR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4519 595 PANTHER - 2 575 - -
Tpr1g4519 595 Gene3D Phosphorylase Kinase; domain 1 236 337 - -
Tpr1g4519 595 CDD lectin_legume_LecRK_Arcelin_ConA 1 187 IPR001220 GO:0030246
Tpr1g4519 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672|GO:0006468
Tpr1g4519 595 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Tpr1g4519 595 Gene3D - 1 195 - -
Tpr1g4519 595 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 2 575 - -
Tpr1g4519 595 SMART serkin_6 262 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4519 595 SUPERFAMILY Protein kinase-like (PK-like) 244 545 IPR011009 -
Tpr1g4519 595 ProSiteProfiles Protein kinase domain profile. 262 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4519 595 Gene3D Transferase(Phosphotransferase) domain 1 338 552 - -
Tpr1g4519 595 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 187 IPR013320 -
Tpr1g4519 595 Pfam Protein kinase domain 265 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4519 595 CDD STKc_IRAK 268 544 - -
Tpr1g4519 595 Pfam Legume lectin domain 5 188 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4519 Tpr-Chr1 53446405 53448569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4519 5 569 Receptor kinase-like Gene Family AT5G55830 36.935 3.03e-119 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g4519 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4519 - - gmx:100788762 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4519 1 53446405 53448569 Tpr1g4519 1 53446405 53448569 ECH