Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4517 ATGAGGTTCATATCTTTGCTACTCAAATATCAATTATTAACACTCATTGTCACTTTCATAGCCATTACCAAAGTTAGCTCCTTGAATTTCAGTTTCCCAACCTTCCAACAAAAAGATGAAGCCAAATTGATACGAAGCAACAACACATATATACAACAAAGTGCCATCCAAGTAACCCCAGATTATAGTACAGTTTCAATGTCCAATTTAGCAGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCATTCAACACCACTTTTGTTCTCAATATAACTCCTAAAACTACCCCTGGTGGAGAAGGCATAGCTTTTATCTTAGCTTCAGATCCAACTCTCCCTGAAAACAGTTCAGGACAATGGCTTGGTATTGTAAATGCTTCCACCAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTTGATACACGAAAGAGTTCAACCGAAGACGGACCTGACAACCATGTTGGAATCAACATAAATAGTATATCCTCAATCATACAAGCATCATTATCAGACACTAAGGTGAATCTTACATCTAGTACAAATGTATTTATAAGAGTTGAATATTCTAAAGATGTGATATCTGTTTTTGGTTCAATGACTGAAAATTCAAGTGATTCTATGGAGACACTTTTGGTATCTCCACCTCTTAATCTCTCTTCCTATTTTAAACAAGAGGTTTTTGTCGGTTTCTCTGCTTCAACAAGCAATTCCACAGAGCTAAACTGTTTGAGAGCATGGGAATTCAATAGTATAGATATTGGTAGTAATAAAAAAAATTACTTGTGGATTTGGATTATAATTCCATTGATCATAATCATAGGTGGATTAGTCTTTTTCTTCCTTTATTTTCAAAGGAAAAAAAACATGGAGCTTCAAGAAGATACATATCAAGGGATAGAGGATCAAATTCAACACTCATCTATGGCGCCAAAGAAATATCGACTAAAGGAATTGATGAAAGCGACAGGTGGATTCAGCCCTCAGAATAAACTTGGAGAAGGTGGATTTGGAATGGTTTATAAGGGTAGTCTTGAAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGAAAAACTCGCGTCAAGGAAAGCAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTGGTGAAACTCGTTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTCGTTTACGAGTTCATGCCAAATGGAAGCTTAGACAAATACCTATTTAACCAATCAAGTGAATTAGAATTACAATATTCAAAAGTACTTGATTGGAAAACAAGAAATAACGTGATTCGTGATGTCGCCCAAGCACTGGATTATCTTCACAATGGATGTGAAAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATTTTGGATTTAGATTACATTGCAAAATTGGGTGATTTTGGATTGGCGCGTACAATTCAAACGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCTGGAACACCGGGTTATATGGCACCAGAAATATTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTGTATGCATTTGGTGTTCTTATTTTGGAAGTTGTGTGTGGAAGAAGACCAGGAAATGTGTATGCACAAGATGATTATAATACAAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGCGAAATTGTTAGTGTTGTAGATAAAAGGATAAGTTATGAAGAGAATGAAGTCGAGCGGGTAAACTGGGAAGAAGTTGAAACTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTATAAATGGAGAAGTTTCTCCTCCAAATGTTCCAATGGAAAGACCTGTTTTTGTTTGGCCTGCGGCTATGCCTTCATGTTTGAAAGTTGGTGAAGATAGCTCTCTTATCAGTGGAACTCTCACTCCAATTACTCAACTTAGTGGTAGATAG 1989 0.368 MRFISLLLKYQLLTLIVTFIAITKVSSLNFSFPTFQQKDEAKLIRSNNTYIQQSAIQVTPDYSTVSMSNLAGRALYKDPFKIASFNTTFVLNITPKTTPGGEGIAFILASDPTLPENSSGQWLGIVNASTNGTSRAAILAVEFDTRKSSTEDGPDNHVGININSISSIIQASLSDTKVNLTSSTNVFIRVEYSKDVISVFGSMTENSSDSMETLLVSPPLNLSSYFKQEVFVGFSASTSNSTELNCLRAWEFNSIDIGSNKKNYLWIWIIIPLIIIIGGLVFFFLYFQRKKNMELQEDTYQGIEDQIQHSSMAPKKYRLKELMKATGGFSPQNKLGEGGFGMVYKGSLENNKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLVGWCYESKELLLVYEFMPNGSLDKYLFNQSSELELQYSKVLDWKTRNNVIRDVAQALDYLHNGCEKRVLHRDIKASNIILDLDYIAKLGDFGLARTIQTRNETHHSTKEIAGTPGYMAPEIFLTGRATVETDVYAFGVLILEVVCGRRPGNVYAQDDYNTSIVYWVWELYGKGEIVSVVDKRISYEENEVERVNWEEVETVLVLGLACCHPNPNERPSMKTVLMVINGEVSPPNVPMERPVFVWPAAMPSCLKVGEDSSLISGTLTPITQLSGR* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4517 662 Pfam Protein tyrosine and serine/threonine kinase 332 611 IPR001245 GO:0004672|GO:0006468
Tpr1g4517 662 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 649 - -
Tpr1g4517 662 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 255 IPR013320 -
Tpr1g4517 662 Pfam Legume lectin domain 27 259 IPR001220 GO:0030246
Tpr1g4517 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Tpr1g4517 662 SUPERFAMILY Protein kinase-like (PK-like) 311 612 IPR011009 -
Tpr1g4517 662 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Tpr1g4517 662 Gene3D Phosphorylase Kinase; domain 1 303 404 - -
Tpr1g4517 662 Gene3D Transferase(Phosphotransferase) domain 1 405 619 - -
Tpr1g4517 662 SMART serkin_6 329 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4517 662 CDD lectin_legume_LecRK_Arcelin_ConA 28 254 IPR001220 GO:0030246
Tpr1g4517 662 Gene3D - 25 265 - -
Tpr1g4517 662 ProSiteProfiles Protein kinase domain profile. 329 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4517 662 CDD STKc_IRAK 335 611 - -
Tpr1g4517 662 PANTHER - 12 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4517 Tpr-Chr1 53417251 53419499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4517 8 645 Receptor kinase-like Gene Family AT5G55830 34.857 7.82e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g4517 PK_Tyr_Ser-Thr 5.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4517 - - gmx:100790353 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4517 1 53417251 53419499 Tpr1g4517 1 53417251 53419499 ECH