Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4516 ATGAGGTTCATGTCTTTGCTAATTAAATATCAATTATTAGCAATCATATTCACTATCATATACCTTACAAAAGTTAGTTGCTTTTATTTTAATTTCCCAACCTTCCACACAAATGATGAATCCAAATTGTCACTAAGCAAAAACTCAAAAATATACTTAGATGCTATCCAAGTAACCCCAGATATTCGTGGTGAAATAAAGGATTATTCTGGCCGAGCTTTTTACAAAAAGCCATACACACTTTGGAACAAAAACAAAATTGCTTCTTTCAACACAACTTTTGTTCTCAACATAAGTCCTCAAACTTCCCCTGGTGGAGAAGGAATAGCTTTTATCTTAACAGCAGATACAACTCTCCCTGAAAATAGTTCAGGACAATGGCTTGGTATTGTAAATGCTTCCACCAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTTGATACACGACAGAGTTCAATTGAAGACGGACCTGACAACCATGTTGGAATCAATATAAACAGCATATCCTCCTTGAAACAAGTATCATTATCAAACACTAAGGTTAATCTTTCATCTAGTTCAGATGTATTTATAAAAATTGAATATTCTAATGATGTAATATCTGTTTTTGGTTCAATGACTGCAAATTCAAATGATTCTAGGGAGACACTTTTGGTATCTCCATCTCTTAATCTCTCTTCCTATTTTAAACAAGAGGTTTATGTCGGTTTCTCGGCTTCAACAAGCAATTACACAGAGCTAAATTGTGTAAAAGCATGGGAATTCAATGGTGTAGATATTGGTAGTAACAAAAATTACTTGTGGATTTTTATTATAATTCCAATAGTATTATTGATTATAATCATAGGTGGATTAGTCTTTTTCTTCCTTTATTTTAAAAGGAAAAAAAACATGGAAACTGAAGAAGATACATATGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATAAACTAAAGGAATTGATGATAGCAACAAGTGATTTCAGCCGTCGGAACAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGAAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGGAGAACTCGCGCCAAGGAAAGCAAGAATTTATAGCAGAAGTTACAACGATTGGAAGCCTTCACCACAAAAACTTAGTGAAACTCGTTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTCGTTTACGAGTTCATGCCAAATGGAAGCTTAGACAAATACCTATTTAACCAATCAAGTGAATTGGAATTTCAATATTCGAAAGTACTTGATTGGAAAACGAGGTATTGTGTGATTCGTGATGTCGCCCAAGCGTTGGATTATCTTCACAATGGATGTGAGAAAAGAGTACTTCATAGAGACGTCAAATCCAGCAACATAATGTTGGATTTAGACTACATTGCAAAATTGGGTGATTTTGGATTGGCGCGTACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCGGGGACGCCAGGTTATATGGCACCCGAAACTTTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTGTATGCATTTGGTGTTCTTGTTTTAGAAGTTGTGTGTGGAAAAACACCCGGAAATGTGTATGCACAAGATGCTTATAAAAATAGTATTGTGTATTGGGTTTGGGAACTTTATGGAAACGGCGAAATTGTTAGTGTTGTCGATAAAAGGATAGATTATGAAGAAAATGAAGTTGAGAGGGCAAAATGGGAAGAAGAAGTTAAAATTGTGCTTGTTCTTGGGTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTAATGGTTCTAAATGGAGAAGCTTCTCCTCCAATTGTTCCAAATGAAAGACCTTCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAACAAGGTGAAGATAGTTCTCTTATCAATGGAACTCTCACTCCATTTTCTCAACTTAGTGGAAGATAG 2010 0.3597 MRFMSLLIKYQLLAIIFTIIYLTKVSCFYFNFPTFHTNDESKLSLSKNSKIYLDAIQVTPDIRGEIKDYSGRAFYKKPYTLWNKNKIASFNTTFVLNISPQTSPGGEGIAFILTADTTLPENSSGQWLGIVNASTNGTSRAAILAVEFDTRQSSIEDGPDNHVGININSISSLKQVSLSNTKVNLSSSSDVFIKIEYSNDVISVFGSMTANSNDSRETLLVSPSLNLSSYFKQEVYVGFSASTSNYTELNCVKAWEFNGVDIGSNKNYLWIFIIIPIVLLIIIIGGLVFFFLYFKRKKNMETEEDTYGGIEDQIQHSSMAPKKYKLKELMIATSDFSRRNKLGEGGFGTVYKGILENNKEIAVKRVSENSRQGKQEFIAEVTTIGSLHHKNLVKLVGWCYESKELLLVYEFMPNGSLDKYLFNQSSELEFQYSKVLDWKTRYCVIRDVAQALDYLHNGCEKRVLHRDVKSSNIMLDLDYIAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKTPGNVYAQDAYKNSIVYWVWELYGNGEIVSVVDKRIDYEENEVERAKWEEEVKIVLVLGLACCHPNPNERPSMKTVLMVLNGEASPPIVPNERPSFVWPAMPSSFKQGEDSSLINGTLTPFSQLSGR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4516 669 CDD lectin_legume_LecRK_Arcelin_ConA 28 258 IPR001220 GO:0030246
Tpr1g4516 669 Gene3D - 26 259 - -
Tpr1g4516 669 Gene3D Transferase(Phosphotransferase) domain 1 412 628 - -
Tpr1g4516 669 Pfam Legume lectin domain 30 260 IPR001220 GO:0030246
Tpr1g4516 669 SUPERFAMILY Protein kinase-like (PK-like) 318 622 IPR011009 -
Tpr1g4516 669 PANTHER - 13 655 - -
Tpr1g4516 669 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 13 655 - -
Tpr1g4516 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tpr1g4516 669 CDD STKc_IRAK 342 624 - -
Tpr1g4516 669 Pfam Protein tyrosine and serine/threonine kinase 339 620 IPR001245 GO:0004672|GO:0006468
Tpr1g4516 669 ProSiteProfiles Protein kinase domain profile. 336 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4516 669 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Tpr1g4516 669 SMART serkin_6 336 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4516 669 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Tpr1g4516 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 258 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4516 Tpr-Chr1 53411968 53415774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4516 8 638 Receptor kinase-like Gene Family AT5G55830 35.199 2.74e-116 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g4516 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4516 - - gmx:100785031 960.288