Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4514 ATGAGCTTCATGTCTTTGCTATACAAATATCTATTATTATTCACTATCATAGCCTTTACCAAAGTTAGTTGCTTGTATTTCAATTTTTCAACTTTTGAACCAAACGATGCAAGCAAATTGTTACTCAATAACTCATATATACAACGAGAAGCTATACAAGTAACCCCAGATAATATTAAAGATTCAATATCCAATTTATCAGGACGCGCTTTATACAAAGATCCATTCAAAATTGCTTCCTTCAACACCACTTTTGTTATCAATATAACTCCTGAAACTTCCCCTGGTGGAGAAGGAATAGCTTTTATCTTAGCTTCTGATCCAACTCTCCCTGAAAATAGTTCAGGACAATGGCTTGGTATTGTAAATGCTGACACTGAAGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTTGATACACGACAGAGTTCAACCAGAGACGGTCCTGATGGCCATGTTGGAATCAACATAAATAGCATCTCCTCTTTGATACAAGTACCATTGATAAACACTAAGGTGAATCTTTCATCTGGTAAAGATGTAACTATAAGAATTGAATATTCTAATGATGTGATATTTGTTTTTGGTTCAATGAGTGGAAATTCACAAGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTACTATTTTAAACAAGTGGTTTATGTTGGTTTCTCTGCTTCAACAAGTACTTATACAGAGCTAAACTGTGTAAAAGCATGGGAATTCAGCGGTGTAGAAGATAGTAAGAAAAACAAACACTTGCTGGTTTGGATTATACTTCCAATGGTGATAATCCTTGGTGTATTGGTCTTTCTCTTGGCTTATTTTCTAACGAAAAAAAACACGGAGATTCAAGAAGATACATATCCAAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATACACTACAGGAATTGATGAAAGCAACCGGTGGATTCAGCCATCAGAACAAACTTGGCGAAGGTGGATTTGGAACGGTTTACAAGGGTACTCTTGGAAACAAGAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTGGTGAAACTTATTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTCGTTTATGAGTTCATGCCTAAAGGAAGCTTAGACAAATACCTATTTAACCAATCAAGTGAATTAGAATCACAATATTCTAAAGTACTTGATTGGAAAACTAGGAATAGCGTGATTCGTGATGTAGCACAAGCATTGGATTATCTTCACAATGGTTGTGAAAGAAGGGTACTTCATAGAGATATTAAAGCAAGCAATATAATGTTGGACTTAGATTACGTCGCTAAATTAGGTGATTTTGGATTAGCGCGTACAGTTCAAAAGAGAAATGAAACTCATCACTCGACAAAGGAAATTGCGGGGACTCCAGGTTATATGGCACCGGAAACTTTTCTAATAGGAAGAGCAACGGTCGAAACAGATGTGTATGCATTTGGTGTACTTGTTTTAGAAGTTGTGTGTGGGAGAAGACCGGGAAATGTGTTTGCACAAGACGATTATAAAAATAGTATAGTGTATCAAGTTTGGGAGCTTTATGGAAAAGGTGAAATTGTTAGTGTTGTGGATAAAAGGATAAGTTGTGAAGAGAAAGAGGTTGAGAGGGTAAAATGGGAAGAAGAAATTGAAATTGTGCTTGTTCTTGGTTTGGCATGTTGTCATCCAAATCCTAATGAAAGACCATCAATGAAAAGTGTTTTAATGGTTTTAAATGGAGAAGCATCTCCTCCAATTATTCCAATGGAAAGACCTTCTTTTGTTTGGCCAGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGTCCATTCACTCAACTTAGTGGAAGATAG 1965 0.3684 MSFMSLLYKYLLLFTIIAFTKVSCLYFNFSTFEPNDASKLLLNNSYIQREAIQVTPDNIKDSISNLSGRALYKDPFKIASFNTTFVINITPETSPGGEGIAFILASDPTLPENSSGQWLGIVNADTEGTSRAAILAVEFDTRQSSTRDGPDGHVGININSISSLIQVPLINTKVNLSSGKDVTIRIEYSNDVIFVFGSMSGNSQDSMETLLVSPPLNLSYYFKQVVYVGFSASTSTYTELNCVKAWEFSGVEDSKKNKHLLVWIILPMVIILGVLVFLLAYFLTKKNTEIQEDTYPRIEDQIQHSSMAPKKYTLQELMKATGGFSHQNKLGEGGFGTVYKGTLGNKKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLIGWCYESKELLLVYEFMPKGSLDKYLFNQSSELESQYSKVLDWKTRNSVIRDVAQALDYLHNGCERRVLHRDIKASNIMLDLDYVAKLGDFGLARTVQKRNETHHSTKEIAGTPGYMAPETFLIGRATVETDVYAFGVLVLEVVCGRRPGNVFAQDDYKNSIVYQVWELYGKGEIVSVVDKRISCEEKEVERVKWEEEIEIVLVLGLACCHPNPNERPSMKSVLMVLNGEASPPIIPMERPSFVWPAMPSSFKEGEDNSLINGPFTQLSGR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4514 654 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 9 646 - -
Tpr1g4514 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Tpr1g4514 654 Pfam Legume lectin domain 25 257 IPR001220 GO:0030246
Tpr1g4514 654 SMART serkin_6 324 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4514 654 Gene3D - 23 263 - -
Tpr1g4514 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 249 IPR013320 -
Tpr1g4514 654 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Tpr1g4514 654 CDD lectin_legume_LecRK_Arcelin_ConA 25 249 IPR001220 GO:0030246
Tpr1g4514 654 ProSiteProfiles Protein kinase domain profile. 324 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4514 654 CDD STKc_IRAK 330 612 - -
Tpr1g4514 654 SUPERFAMILY Protein kinase-like (PK-like) 305 610 IPR011009 -
Tpr1g4514 654 Pfam Protein kinase domain 325 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4514 654 Gene3D Transferase(Phosphotransferase) domain 1 400 616 - -
Tpr1g4514 654 PANTHER - 9 646 - -
Tpr1g4514 654 Gene3D Phosphorylase Kinase; domain 1 298 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4514 Tpr-Chr1 53380324 53384783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4514 4 626 Receptor kinase-like Gene Family AT5G55830 36.111 7.94e-118 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tpr1g4514 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4514 - - gmx:100785031 893.649