Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4511 ATGGGGGAACAAACATCTGATTTAATTGCAATGGAAATTGATTCGAATCCGGAACAATTATCAGTTGCTATTGCTACTATTAGTGCTTTGAATTTGAATGATCCAATTCATCAAGTTCATGGTTATCGTAATAGTAATCTATATAATCCTGATACATGGGAAAGTGTTTTGAATCGCAATCGAAATGCTGTCGAAAAGCCAGAAGCTAGTAAAACTGATGTTGCTGCTGCTGCATTGGATAAGACTAAGAGTAATGATGGAAGTTTCTTTGATTGTAATATTTGTTTAGATTTGGCTAAGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGATGGTTGAATTTAAGAGCTTCTCGAACTCGGACTAAAGAATGTCCTGTTTGCAAGGGTGAAGTTACTGATAAGGATGTTATTCCTATATATGGTGTTGGGAATAATGACGAGGTTCCTAATGAGGATTCAACCTGCGAAACGCCTCAAATTCCTCCAAGACCTAATGCAAAGCGTGTCTCGAGGGATTCTAATCCAAGGCCTGTCTTATGGGATTTTAATTCAACTGTCTCGAGGGATTTTAATGAAAGGCCTCATTCCCTATTTGGACCACCACCGGGCCATCATATTCGGGGCTCAAATTTTCAATTTGCTACTGCTTACTCAGTCTCCCATGTTCAAAGATAG 699 0.3877 MGEQTSDLIAMEIDSNPEQLSVAIATISALNLNDPIHQVHGYRNSNLYNPDTWESVLNRNRNAVEKPEASKTDVAAAALDKTKSNDGSFFDCNICLDLAKDPVVTCCGHLFCWPCIYRWLNLRASRTRTKECPVCKGEVTDKDVIPIYGVGNNDEVPNEDSTCETPQIPPRPNAKRVSRDSNPRPVLWDFNSTVSRDFNERPHSLFGPPPGHHIRGSNFQFATAYSVSHVQR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4511 232 Pfam RING-type zinc-finger 92 133 IPR027370 -
Tpr1g4511 232 MobiDBLite consensus disorder prediction 158 180 - -
Tpr1g4511 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 49 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr1g4511 232 SUPERFAMILY RING/U-box 88 149 - -
Tpr1g4511 232 PANTHER OS01G0830200 PROTEIN 49 221 - -
Tpr1g4511 232 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Tpr1g4511 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Tpr1g4511 232 CDD RING-HC_AtRMA_like 90 137 - -
Tpr1g4511 232 SMART ring_2 92 135 IPR001841 -
Tpr1g4511 232 ProSiteProfiles Zinc finger RING-type profile. 92 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4511 Tpr-Chr1 53324184 53337084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4511 77 177 C3H Transcription Factor Family AT3G58030 55.446 3.39e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4511 K10666 - gmx:100811099 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4511 1 53324184 53337084 Tpr1g4511 1 53324184 53337084 ECH