Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4509 ATGGAACTTGCTTTGAGCTTAGGTGACACACCAAAATTACCCTTTTCTTTTCTTGACAAACCCACTAAAGATCCATTACCAAATTTGCTCTTAACACAACAAGGAAAAAACTTAGAGCTTGAAGAAAGTGGTTCCTTAGATCCACCTATTCAACTTGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCATCACTCTTCATCTCACCTTCCCATTCCTTGGCTCACTCAACCATGTGGACCGGTGAGGGAGTTAGATGTGAACCGTTTTCCGGTGATGACGGAGGAGGCGGACGACGGTGCCTCACTGTCATCCCCTAGCAGTTCTGTGTCACCATTTCAAATGGATTTCAGTATGATGAACAACAATGCTGAATATGGAGGAAGAAACAAGAGGGAAAATGAAGGTGAAGCTGAAAGAGTGAGTGATGATGATGAAAATGGGTCAACTCGGAAGAAACTCAGACTTTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTTTAAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTAAGTCCTCGTCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAGGAACTTCAAGAACTTAGAGCTTTGAAAACTAATCAACCATTTTACATGCAACTACCAGCTACTACTCTAACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTTGCAACAATCAAACCAATAACAAGGCCAGAGTCCAACAACAGAAGGCCCAAGCCCATCAGATTCCTTCATGA 876 0.411 MELALSLGDTPKLPFSFLDKPTKDPLPNLLLTQQGKNLELEESGSLDPPIQLDLLPFSPVLRSHHSSSHLPIPWLTQPCGPVRELDVNRFPVMTEEADDGASLSSPSSSVSPFQMDFSMMNNNAEYGGRNKRENEGEAERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNQPFYMQLPATTLTMCPSCERVATNPCNNQTNNKARVQQQKAQAHQIPS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4509 291 SUPERFAMILY Homeodomain-like 144 208 IPR009057 -
Tpr1g4509 291 MobiDBLite consensus disorder prediction 128 154 - -
Tpr1g4509 291 Pfam Homeobox associated leucine zipper 207 241 IPR003106 GO:0006355|GO:0043565
Tpr1g4509 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 37 283 - -
Tpr1g4509 291 PANTHER - 37 283 - -
Tpr1g4509 291 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
Tpr1g4509 291 SMART HOX_1 149 211 IPR001356 GO:0003677
Tpr1g4509 291 MobiDBLite consensus disorder prediction 126 154 - -
Tpr1g4509 291 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Tpr1g4509 291 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Tpr1g4509 291 Gene3D - 155 205 - -
Tpr1g4509 291 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Tpr1g4509 291 Coils Coil 213 243 - -
Tpr1g4509 291 CDD homeodomain 151 208 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4509 Tpr-Chr1 53288400 53291105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4509 49 275 Homeobox Transcription Factor Family AT5G47370 53.782 2.80e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr1g4509 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4509 K09338 - gmx:100776113 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4509 1 53288400 53291105 Tpr1g4509 1 53288400 53291105 ECH
Tpr6g1622 6 17380602 17382508 Tpr1g4509 1 53288400 53291105 PCT