Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4507 ATGAAAAACAACACAACAACGGTAAGAAACCTAAACCATCAAGAACAAACACTAACCAACGACAAAACCACCAACAATATGCACCCTGATTTGCACCACATCACTGAGCTTTTCCGAAGGAATTTTGGCTCTCAACGAATCCAAAATGAAGTCACAACACAAAGACTTCAAGGACAGTTGAAGGAGCTAGTTCGTGTTTCAGATCTCGATTTACCGAATCATCAACAATTGCGTGCAATTGTAAGGAGAATAAGAATGACATATGATTCCGTTCGGCTTTTGGCTGTGGCAGAAGAAGAAAACGGGGTTGTTGTTCATCCGGAGAGAAGCGATCAAAGAGCTTCTGCTTTGATGAGGAGGCACGGTTTGTGGTTGAATCGTGATAAGACGATCATCGGAACAATTCCCGGTGTTTGCATCGGGGATGTGTTTTTTTATAAAACGGAATTGGCTGTTGTTGGTTTGCATGGTCAACCAGAAGCTGACATTGATTATATACCTGGTAGTGTGAGTTCGAGTGGCGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGAATGATGTTGATCAAAGTAATGTTATTGTTTATTCTGTTTATGGCGGTGAGGATAAGAATTCGAGGCAAGTTTTTCATCAGAAGTTAGAAGGTGGGAACCTTGCTATGGAGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCGTAGTGTCCAATATGAAGGTACTGCTTCTGTGTTTGATAAGGTTTATTTTTATGATGGTTTGTATAAGATAGTTAAATCTTGGGTTGATAGTAAATCTGGTTTTAATGTCTACAATTTTAAGTTACAGAGAATCGACGGTCAAGCTAAGATGGATTGTGTTGTTTTTAACCCTAGGTGTGTCTTATCTCTAGATATTTCCAAAAAGAAAGAGAATGTCGATATTAGGCTAGTTAATAATATTGATAGGAATCATGACCCGATCTATTTTGAGTATCTTCCGAGGGCTATTTTTCCGCATTTTGTGTTACAACAGAGCGGGGGGGAAACAGGTTGTGAATGTATAAACAACTGTGTGGATGGATGCTTCTGTTTCATAAAGAATGGAAATGAATTTCCATATAGTCAAAATGGGATTCTATTGAAAGGGAGGCCGTTCATTTTTGAATGTGGTCCACTTTGTCGCTGTCCTCCACATTGTCGTAACCGTGTTACACAAAAAGGTCTGAAACACAGGTTGGAAGTGTTTAGATCTAGGAACTCTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCAGGTACTTTCATATGTGAGTACACCGGGATTGTCTTGACTAGGGAGCAACAACAAATTGTTACCATGAATGGTGATTCATTGATATATCCAAGTCAATTTGCAGAAAATTGGGCGGAATGGGGTAATTTATCCCTAATAGACACTAGTTATAAATGTCCATCCTATCCATCAATTCCTCCGTTAGAGTTTGCTATGGATGTGTCAAGAATGAGGAATGTTGCATGCTATATAAGTCATAATTCAACTCCTAATGTGATGGTTCAATTTGTTCATTTTGAGCATAATAATGTGATGTTCCCTCACACTATGCTATTTGCAATAGAGAACATCCCTCCATTGAGAGAACTTACCCTTGATTATGGGGTAGCTGATGGTGACTTGAGTGGCTAA 1680 0.3923 MKNNTTTVRNLNHQEQTLTNDKTTNNMHPDLHHITELFRRNFGSQRIQNEVTTQRLQGQLKELVRVSDLDLPNHQQLRAIVRRIRMTYDSVRLLAVAEEENGVVVHPERSDQRASALMRRHGLWLNRDKTIIGTIPGVCIGDVFFYKTELAVVGLHGQPEADIDYIPGSVSSSGEPIATSVIVSGGYENDVDQSNVIVYSVYGGEDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRSVQYEGTASVFDKVYFYDGLYKIVKSWVDSKSGFNVYNFKLQRIDGQAKMDCVVFNPRCVLSLDISKKKENVDIRLVNNIDRNHDPIYFEYLPRAIFPHFVLQQSGGETGCECINNCVDGCFCFIKNGNEFPYSQNGILLKGRPFIFECGPLCRCPPHCRNRVTQKGLKHRLEVFRSRNSGWGVRSLDLIQAGTFICEYTGIVLTREQQQIVTMNGDSLIYPSQFAENWAEWGNLSLIDTSYKCPSYPSIPPLEFAMDVSRMRNVACYISHNSTPNVMVQFVHFEHNNVMFPHTMLFAIENIPPLRELTLDYGVADGDLSG* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4507 559 Pfam SET domain 419 551 IPR001214 GO:0005515
Tpr1g4507 559 SUPERFAMILY PUA domain-like 115 294 IPR015947 -
Tpr1g4507 559 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 559 IPR025794 GO:0016571
Tpr1g4507 559 ProSiteProfiles SET domain profile. 408 551 IPR001214 GO:0005515
Tpr1g4507 559 Pfam Pre-SET motif 303 400 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4507 559 ProSiteProfiles YDG domain profile. 133 281 IPR003105 -
Tpr1g4507 559 Gene3D SET domain 295 558 IPR046341 -
Tpr1g4507 559 SUPERFAMILY SET domain 292 552 IPR046341 -
Tpr1g4507 559 ProSiteProfiles Pre-SET domain profile. 347 405 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4507 559 SMART preset_2 300 392 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr1g4507 559 Gene3D - 115 294 IPR036987 -
Tpr1g4507 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 41 554 - -
Tpr1g4507 559 Pfam SAD/SRA domain 132 285 IPR003105 -
Tpr1g4507 559 SMART set_7 408 557 IPR001214 GO:0005515
Tpr1g4507 559 SMART G9a_1 128 285 IPR003105 -
Tpr1g4507 559 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 41 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4507 Tpr-Chr1 53256048 53257928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4507 78 553 Su(var)3-9 homologs AT5G04940 37.952 3.92e-98 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g4507 SAD_SRA 6.2e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4507 K11420 - gmx:100795514 743.806