Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4505 ATGGATCTAGGAGGCACTGGCAGTTCTTTCAAAGAAGTTCTTGAGTCTAACCTGATATTTTCAGATTTTGAGACATCTAAGTCTAAATCTGAGGCCAACTATAATAGTACATTTGCTAAATCAAGGACTTATTTGGATGGTAAGAATGGGAATCATTCAAAGAATGGTGTCTATGACCTACTAGAGTGTCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCATCAGTGCCCAAATGGCCACACATTATGTTCCAATTGTAAGATTGTAGTGCATAATCGTTGCCCAACATGTCATCGTGATCTTGGGAATATAAGGTGTTTGGCTTTAGAGAAAGTCGCAGAATCAATGGAGCTTCCATGCAGATACCATAATCTAGGTTGTCATGATATATTCGCATACCACACTAAGCTAAAGCATGAGCAGAATTGTCAATTTCGTCCATACAATTGCCCATATGCTGGATCAGAGTGCTCTATGATGTGTGACATTCCAACACTTATGACCCATCTCAAGGAGGATCACAAGGTCGACATACATGACGGATTCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTTAATTGTTTTGGAAAGCATTTTTGCTTGCACTTCGAGGCGTTTCTACTTGGCACATCTCCAGTTTATATGGCATTTTTACGATTTTTGGGTGATGAGAAAGAGGCAAAGAAATTCAGGTATAGTTTAGAGGTTGGGGCAAATAGCCGCAAACTAATATGGCAGGGAATTCCAAGGAGCATTCGCGAGAGTCATAGAAAAGTCCGTGACAGTCAAGATGGACTCATCATTCAAAGAAATCTAGCTCTTTATTTTTCAGGTGGTGATAAACAACAATTAAAGTTGAGGGTCACAGGTCGTATATGGAAAGAAGAATGA 936 0.3932 MDLGGTGSSFKEVLESNLIFSDFETSKSKSEANYNSTFAKSRTYLDGKNGNHSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIVVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYHNLGCHDIFAYHTKLKHEQNCQFRPYNCPYAGSECSMMCDIPTLMTHLKEDHKVDIHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTSPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKQQLKLRVTGRIWKEE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4505 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 8 311 - -
Tpr1g4505 311 SUPERFAMILY TRAF domain-like 119 308 - -
Tpr1g4505 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 168 IPR013083 -
Tpr1g4505 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 304 IPR008974 GO:0005515
Tpr1g4505 311 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Tpr1g4505 311 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr1g4505 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 8 311 - -
Tpr1g4505 311 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Tpr1g4505 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Tpr1g4505 311 Coils Coil 308 311 - -
Tpr1g4505 311 CDD RING-HC_SIAHs 61 98 - -
Tpr1g4505 311 SUPERFAMILY RING/U-box 56 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4505 Tpr-Chr1 53227208 53229474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4505 7 311 C3H Transcription Factor Family AT2G41980 76.144 1.90e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4505 K04506 - gmx:100813966 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4505 1 53227208 53229474 Tpr1g4505 1 53227208 53229474 ECH