Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4504 ATGGAAGTTGATGGAAATGGAGAGCATGTTGTTGATGGGATTGAAGAGCAAGCTTTCAATGAAACTGTCGACAATGATTCATGTGCTGTTGAGGTTAATGATAAAGAACCATACACTGGAATGAAATTTGGTTCACAAGAAAATGCTCATTCATTTTACAGGGATTATGCTAAAGTTGTCGGGTTTGGAATATCAACTAAACATAGTCGTCGTTCAAAAGCTTCGAGACAGTTTATTGATGTGACTTATGCTTGCACAAGATATGGGAAGCAGCGGGAATCCATTGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTAGCTTACGTATAAAAAGAAATTGTGACGGAAACTGGATTGTTCACAATTTCATTAAACATCATAACCATGAACTTTTTCCAGGATATGCACATTATTTTCCTTGTCATAGAGGAATCAATAAAGCTCAAAAGCATTGTATTGAAAATTGGCAACATGCTGGAGTGAGAACAAGCCAAATTTACGATGCAATGGCCAAACAACATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATATCAGAAATCATTTAGATAAAGGTCGGCGCTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTGGAGTGTTTTATGCACATGCAAGAAGAAAACCCAAAATTCTTTTATGCAATAGATTTGGATGATGAGGATCGTATAAAAAATGTATTTTGGGTTGATGCAAAAGGTAGAGATGACTATCAAGAGTTTGGAGATGTGATTTCGTTTGATACCACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGTTGTGCATTACTCTCAGATGAGTCCACACATACTTTCACATGGTTGATGAAAACATGGCTCAGAGCAATGGGTGGAAAACCTCCGAGTGATCCTCAAGAGAAAAAAACAAAAGGTGCTCCAAGAAGAATTAAGAGTGGAATAGAGAAAGGTCGTAAAAGAACATCTAATGATAAAAAAAAGAAGGCAAATCAAGAGTGTTCGAGGAGTTAA 1074 0.3687 MEVDGNGEHVVDGIEEQAFNETVDNDSCAVEVNDKEPYTGMKFGSQENAHSFYRDYAKVVGFGISTKHSRRSKASRQFIDVTYACTRYGKQRESIAQNPRPCLKVECEASLRIKRNCDGNWIVHNFIKHHNHELFPGYAHYFPCHRGINKAQKHCIENWQHAGVRTSQIYDAMAKQHGGYENIGCLEKDIRNHLDKGRRLALESGDANAMLECFMHMQEENPKFFYAIDLDDEDRIKNVFWVDAKGRDDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLSDESTHTFTWLMKTWLRAMGGKPPSDPQEKKTKGAPRRIKSGIEKGRKRTSNDKKKKANQECSRS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4504 357 Pfam MULE transposase domain 256 316 IPR018289 -
Tpr1g4504 357 MobiDBLite consensus disorder prediction 313 357 - -
Tpr1g4504 357 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 316 IPR031052 GO:0006355
Tpr1g4504 357 MobiDBLite consensus disorder prediction 316 357 - -
Tpr1g4504 357 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Tpr1g4504 357 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 15 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4504 Tpr-Chr1 53222552 53224956 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g4504 FAR1 2.3e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4504 - - dzi:111309578 428.713