Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4497 ATGCTTGACGAAGCTATACATGCTGACCTCACCATTATAACAGCAGATGGTACACTCAAGGCACATAAAGCAGTCTTGTCCGCAACTTCTCCTGCATTCCTGGCCTCATATCGTGACAGCAGCGAAGAGAAAGAGTCGTCTACAATCCACACAGAAGAAATGTCACAAGAATCCTGCACGGCCCTTCTAAGTTACATGTACGGCACAATAAAACCCGGAGATTTCTGGAAACACAGGCTTTCATTGCTCGGAGCAGCCAATAAATACGACATAGGCGATCTCAAAGATGCGTGTGAGGAAAGCCTACTCGAAGATCTTAACTCCGGGAATGTTCTTGAGAGGCTGAATGAGGCTTGGTTGTACCAGCTGCAAAAGTTAAAGAAAATGTGA 390 0.4564 MLDEAIHADLTIITADGTLKAHKAVLSATSPAFLASYRDSSEEKESSTIHTEEMSQESCTALLSYMYGTIKPGDFWKHRLSLLGAANKYDIGDLKDACEESLLEDLNSGNVLERLNEAWLYQLQKLKKM* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4497 129 SMART BTB_4 8 106 IPR000210 GO:0005515
Tpr1g4497 129 Pfam BTB/POZ domain 4 104 IPR000210 GO:0005515
Tpr1g4497 129 Gene3D Potassium Channel Kv1.1; Chain A 1 129 IPR011333 -
Tpr1g4497 129 PANTHER OS08G0103600 PROTEIN 1 128 - -
Tpr1g4497 129 ProSiteProfiles BTB domain profile. 8 67 IPR000210 GO:0005515
Tpr1g4497 129 PANTHER OS08G0495500 PROTEIN-RELATED 1 128 IPR044714 -
Tpr1g4497 129 SUPERFAMILY POZ domain 2 104 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4497 Tpr-Chr1 53091858 53092247 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tpr1g4497 BTB 1.5e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4497 K10523 - gmx:100786905 207.994