Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4479 ATGTCTGCAACTATGAGAACAAGTTCATGGGCAGAATCTGCTGATGCATCATCTGCACGCCCTGTCAAGCCGGCATATGTACCTCCGCATCTTAGGAACCGATCAGTGGCTCCGGCCGAGCCTCCTTCATTTGTGTCTAATGCTAATGAGAGGGGTTTGGGTGGTAATTGGGGTGGTTCCTCTAACTCTAGGCAGGATTTTGGCAATGGTGGTAGGCAAGGATATGGTTCTGGTTCTGGTGGTGGGTTTAACAATAGAGGAGGAGCAGGGATGGGGGTGGGGAGGGAGCGTGGGGGAAGACGTGAGGCGAATCCTTTTGAGAATGATGTTGATGAATCTTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACCAGCGGGGAGAATGTTCCTGCTCCTGTGAATACATTTGCGGAAATAGATTTAGGTGATGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACACCGGTTCAGAGGTATGCCATACCTATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACCGGGTCAGGAAAGACCGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCCGTATGCTCAAAGACCCCGTGTGGCACGGACTGCTTATCCTCTCGCACTTATTCTGTCCCCTACCCGGGAGCTTTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATCAAACCGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCCCCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGATTAGTAGATTTGCTTGAGAGAGCTAGGGTGTCATTACAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCACCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCTAAAGAGATACAGAGACTTGCGTCAGATTTTCTTGCAAGTTATATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATCCATGGTGATAGAACACAGCAAGAAAGAGAACAAGCATTGAGGTCGTTCAAGACTGGAAACACTCCAATTCTGGTGGCAACAGATGTTGCAGCACGTGGACTTGATATTCCACGGGTAGCACATGTTGTAAACTTTGATCTTCCTAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGACTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCGTGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGAAGTAGAAATAAGAGGACCGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTACGGCGGAACTGGTGGTGGTTATGGGGTTCCTGCGAGTTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1800 0.4639 MSATMRTSSWAESADASSARPVKPAYVPPHLRNRSVAPAEPPSFVSNANERGLGGNWGGSSNSRQDFGNGGRQGYGSGSGGGFNNRGGAGMGVGRERGGRREANPFENDVDESFTEQENTGINFDAYDDIPVETSGENVPAPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREPYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGSRNKRTGGARFGGRDVRKESSYNKGNDYYGGTGGGYGVPASYGGGYGQGVTSAWD* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4479 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Tpr1g4479 599 CDD DEADc_DDX3_DDX4 145 365 IPR044763 GO:0003724|GO:0005524
Tpr1g4479 599 MobiDBLite consensus disorder prediction 552 566 - -
Tpr1g4479 599 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g4479 599 Pfam DEAD/DEAH box helicase 168 348 IPR011545 GO:0003676|GO:0005524
Tpr1g4479 599 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 33 570 - -
Tpr1g4479 599 MobiDBLite consensus disorder prediction 1 106 - -
Tpr1g4479 599 CDD SF2_C_DEAD 371 507 - -
Tpr1g4479 599 Pfam Helicase conserved C-terminal domain 383 498 IPR001650 -
Tpr1g4479 599 MobiDBLite consensus disorder prediction 543 568 - -
Tpr1g4479 599 MobiDBLite consensus disorder prediction 49 72 - -
Tpr1g4479 599 SMART helicmild6 417 498 IPR001650 -
Tpr1g4479 599 Gene3D - 101 361 IPR027417 -
Tpr1g4479 599 Gene3D - 362 540 IPR027417 -
Tpr1g4479 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 515 IPR027417 -
Tpr1g4479 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 359 IPR014001 -
Tpr1g4479 599 SMART ultradead3 163 374 IPR014001 -
Tpr1g4479 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 537 IPR001650 -
Tpr1g4479 599 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4479 Tpr-Chr1 52718277 52724073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4479 142 530 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 2.83e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4479 K11594 - gmx:100818326 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4479 1 52718277 52724073 Tpr1g4479 1 52718277 52724073 ECH