Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g4479 | ATGTCTGCAACTATGAGAACAAGTTCATGGGCAGAATCTGCTGATGCATCATCTGCACGCCCTGTCAAGCCGGCATATGTACCTCCGCATCTTAGGAACCGATCAGTGGCTCCGGCCGAGCCTCCTTCATTTGTGTCTAATGCTAATGAGAGGGGTTTGGGTGGTAATTGGGGTGGTTCCTCTAACTCTAGGCAGGATTTTGGCAATGGTGGTAGGCAAGGATATGGTTCTGGTTCTGGTGGTGGGTTTAACAATAGAGGAGGAGCAGGGATGGGGGTGGGGAGGGAGCGTGGGGGAAGACGTGAGGCGAATCCTTTTGAGAATGATGTTGATGAATCTTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACCAGCGGGGAGAATGTTCCTGCTCCTGTGAATACATTTGCGGAAATAGATTTAGGTGATGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACACCGGTTCAGAGGTATGCCATACCTATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACCGGGTCAGGAAAGACCGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCCGTATGCTCAAAGACCCCGTGTGGCACGGACTGCTTATCCTCTCGCACTTATTCTGTCCCCTACCCGGGAGCTTTCTTGTCAGATACATGACGAGGCCAAAAAGTTTTCTTATCAAACCGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCCCCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGATTAGTAGATTTGCTTGAGAGAGCTAGGGTGTCATTACAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCACCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCTAAAGAGATACAGAGACTTGCGTCAGATTTTCTTGCAAGTTATATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAACTTGCATCCATGGTGATAGAACACAGCAAGAAAGAGAACAAGCATTGAGGTCGTTCAAGACTGGAAACACTCCAATTCTGGTGGCAACAGATGTTGCAGCACGTGGACTTGATATTCCACGGGTAGCACATGTTGTAAACTTTGATCTTCCTAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGACTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCGTGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGAAGTAGAAATAAGAGGACCGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCATATAATAAAGGAAATGATTACTACGGCGGAACTGGTGGTGGTTATGGGGTTCCTGCGAGTTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG | 1800 | 0.4639 | MSATMRTSSWAESADASSARPVKPAYVPPHLRNRSVAPAEPPSFVSNANERGLGGNWGGSSNSRQDFGNGGRQGYGSGSGGGFNNRGGAGMGVGRERGGRREANPFENDVDESFTEQENTGINFDAYDDIPVETSGENVPAPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREPYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGSRNKRTGGARFGGRDVRKESSYNKGNDYYGGTGGGYGVPASYGGGYGQGVTSAWD* | 600 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g4479 | 599 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 144 | 172 | IPR014014 | GO:0003724 | |
Tpr1g4479 | 599 | CDD | DEADc_DDX3_DDX4 | 145 | 365 | IPR044763 | GO:0003724|GO:0005524 | |
Tpr1g4479 | 599 | MobiDBLite | consensus disorder prediction | 552 | 566 | - | - | |
Tpr1g4479 | 599 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Tpr1g4479 | 599 | Pfam | DEAD/DEAH box helicase | 168 | 348 | IPR011545 | GO:0003676|GO:0005524 | |
Tpr1g4479 | 599 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED | 33 | 570 | - | - | |
Tpr1g4479 | 599 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
Tpr1g4479 | 599 | CDD | SF2_C_DEAD | 371 | 507 | - | - | |
Tpr1g4479 | 599 | Pfam | Helicase conserved C-terminal domain | 383 | 498 | IPR001650 | - | |
Tpr1g4479 | 599 | MobiDBLite | consensus disorder prediction | 543 | 568 | - | - | |
Tpr1g4479 | 599 | MobiDBLite | consensus disorder prediction | 49 | 72 | - | - | |
Tpr1g4479 | 599 | SMART | helicmild6 | 417 | 498 | IPR001650 | - | |
Tpr1g4479 | 599 | Gene3D | - | 101 | 361 | IPR027417 | - | |
Tpr1g4479 | 599 | Gene3D | - | 362 | 540 | IPR027417 | - | |
Tpr1g4479 | 599 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 224 | 515 | IPR027417 | - | |
Tpr1g4479 | 599 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 175 | 359 | IPR014001 | - | |
Tpr1g4479 | 599 | SMART | ultradead3 | 163 | 374 | IPR014001 | - | |
Tpr1g4479 | 599 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 386 | 537 | IPR001650 | - | |
Tpr1g4479 | 599 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 33 | 570 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g4479 | Tpr-Chr1 | 52718277 | 52724073 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g4479 | 142 | 530 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.923 | 2.83e-58 | 199 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g4479 | K11594 | - | gmx:100818326 | 910.598 |