Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4475 ATGGCACTACCACTCCTCCTCCGCTTGACTTCTTCTTCTTCTTTACGGTTCCGTAAACCATTTCGCCTCTTGGCATTTACATTCTCTACCACTTCACAGCCAAACCCACCTCCCATTCGAGTTTCCCTCACCGACTCAGTGGGTCGCGCTGTCTTCGCAACTCGCCCAATCCTTACCGGAGATCTCATCCACACCGCCGAACCCGCCATCTGCCACCCTTCACCTTCCTCCCTCCATCCCGTCTGCTACTCATGTCTCGCCAGACTCCCTAACCACTCCACCGTCTCCCCCTTTTGTTCTCACCGTTGCCACCAACGCAGTAAGGAATATTATGATGTTGAGATGAAAGCAAATTGGACGGATTTTGATAACTATTGCCGTGATAAATACCTGAACTCTTTTCAAAGGAACCAAGGTTTAAAATATCCCTTCCTAGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTGCCAGAAGTGACAGTATTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAGAGGAGTTCACCTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGAAGATGAACAAATTGCATTTTTAACCAAGCAATGGTACATTAGTGTTTTGGCACGAATTCGAATCAATGCATTTCGCATCGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATACTTCCTTCATTTTATAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAGTGCAGTGGCAAAATTGAAGACCCTCCGCGACATTGATGAAGGTGAAGAACTGAGAATCTGCTATATAGATACCAGTATGGACCGTGATGCCCGGCAAGAACTATTGTTTCGAGGATTTGGATTTCATTGCAATTGTAGTAGGTGTTTGCATGGTGATTAG 978 0.4448 MALPLLLRLTSSSSLRFRKPFRLLAFTFSTTSQPNPPPIRVSLTDSVGRAVFATRPILTGDLIHTAEPAICHPSPSSLHPVCYSCLARLPNHSTVSPFCSHRCHQRSKEYYDVEMKANWTDFDNYCRDKYLNSFQRNQGLKYPFLVKRLACMIISGVARSDSIDILQPANLTPEMILEMEEEFTLLRNAFTKALIEDEQIAFLTKQWYISVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDSAVAKLKTLRDIDEGEELRICYIDTSMDRDARQELLFRGFGFHCNCSRCLHGD* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4475 325 Gene3D SET domain 50 321 IPR046341 -
Tpr1g4475 325 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 45 322 - -
Tpr1g4475 325 SMART set_7 37 301 IPR001214 GO:0005515
Tpr1g4475 325 CDD SET_SMYD 234 321 - -
Tpr1g4475 325 Pfam SET domain 48 294 IPR001214 GO:0005515
Tpr1g4475 325 ProSiteProfiles SET domain profile. 37 295 IPR001214 GO:0005515
Tpr1g4475 325 Gene3D - 138 219 - -
Tpr1g4475 325 Gene3D - 81 137 - -
Tpr1g4475 325 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3 45 322 - -
Tpr1g4475 325 SUPERFAMILY SET domain 36 319 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g4475 SET 8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4475 - - lja:Lj0g3v0252639.2 495.738