Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4473 ATGAGGGGAAGAAGCTACAGTTACAGTCCATCACCTCCAAGACATTACGGTGGTCGAAGGGGACGCAGTCCTAGTCCTAGGGGACGTTACGGAGGAGGCCGCTACAGAGGCCGTGATAGAGACTTGCCAACGAGTCTCCTTGTCCGGAATCTGCATAAAGATTGCAGGCCGGAAGATCTGCACGATCCATTTAGCCAGTTTGGTCCTGTCAAGGATATTTACCTGCCTCGTGATTATTATTCTGGGGAGCCAAGGGGTTTTGGGTTTGTTCAATTTGTGGACCCGGCTGATGCTGCAGATGCAAAATATCAAATGGACGGTCAAGTTCTTCTTGGTCGAGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGAAGATCTCCCCGCCGTCGTTCTCGTTCACCACGCTATGCAAGAACCTATTCTCCTGGTCCAGACTATTCACCTTCTCCAAGACAAAGGCGATATTCCAGATATTCCAGGTCAATTTCACCAAGGGATACAAGGTATAGGAGGGGATCATACTCTAGGTCCCCTTATAGTAGATCACCTTATGCATCAAGAAGCCCAAGCCGGGGAAGGAGTTACAGCAGGAGCCGTAGTCCAGGGTACTCTAGGTGA 672 0.4866 MRGRSYSYSPSPPRHYGGRRGRSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFSQFGPVKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYQMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSPGPDYSPSPRQRRYSRYSRSISPRDTRYRRGSYSRSPYSRSPYASRSPSRGRSYSRSRSPGYSR* 224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4473 223 Gene3D - 38 156 IPR012677 -
Tpr1g4473 223 SUPERFAMILY RNA-binding domain, RBD 44 150 IPR035979 GO:0003676
Tpr1g4473 223 MobiDBLite consensus disorder prediction 124 141 - -
Tpr1g4473 223 MobiDBLite consensus disorder prediction 1 41 - -
Tpr1g4473 223 MobiDBLite consensus disorder prediction 191 223 - -
Tpr1g4473 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
Tpr1g4473 223 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 219 - -
Tpr1g4473 223 MobiDBLite consensus disorder prediction 124 223 - -
Tpr1g4473 223 SMART rrm1_1 45 118 IPR000504 GO:0003723
Tpr1g4473 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Tpr1g4473 223 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 219 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr1g4473 Tpr-Chr1 52652570 52655582 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4473 44 117 Eukaryotic Initiation Factors Gene Family AT3G16380 37.838 6.18e-09 53.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4473 K12900 - gmx:100816913 206.838