Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g4473 | ATGAGGGGAAGAAGCTACAGTTACAGTCCATCACCTCCAAGACATTACGGTGGTCGAAGGGGACGCAGTCCTAGTCCTAGGGGACGTTACGGAGGAGGCCGCTACAGAGGCCGTGATAGAGACTTGCCAACGAGTCTCCTTGTCCGGAATCTGCATAAAGATTGCAGGCCGGAAGATCTGCACGATCCATTTAGCCAGTTTGGTCCTGTCAAGGATATTTACCTGCCTCGTGATTATTATTCTGGGGAGCCAAGGGGTTTTGGGTTTGTTCAATTTGTGGACCCGGCTGATGCTGCAGATGCAAAATATCAAATGGACGGTCAAGTTCTTCTTGGTCGAGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGAAGATCTCCCCGCCGTCGTTCTCGTTCACCACGCTATGCAAGAACCTATTCTCCTGGTCCAGACTATTCACCTTCTCCAAGACAAAGGCGATATTCCAGATATTCCAGGTCAATTTCACCAAGGGATACAAGGTATAGGAGGGGATCATACTCTAGGTCCCCTTATAGTAGATCACCTTATGCATCAAGAAGCCCAAGCCGGGGAAGGAGTTACAGCAGGAGCCGTAGTCCAGGGTACTCTAGGTGA | 672 | 0.4866 | MRGRSYSYSPSPPRHYGGRRGRSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFSQFGPVKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYQMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSPGPDYSPSPRQRRYSRYSRSISPRDTRYRRGSYSRSPYSRSPYASRSPSRGRSYSRSRSPGYSR* | 224 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g4473 | 223 | Gene3D | - | 38 | 156 | IPR012677 | - | |
Tpr1g4473 | 223 | SUPERFAMILY | RNA-binding domain, RBD | 44 | 150 | IPR035979 | GO:0003676 | |
Tpr1g4473 | 223 | MobiDBLite | consensus disorder prediction | 124 | 141 | - | - | |
Tpr1g4473 | 223 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Tpr1g4473 | 223 | MobiDBLite | consensus disorder prediction | 191 | 223 | - | - | |
Tpr1g4473 | 223 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 46 | 115 | IPR000504 | GO:0003723 | |
Tpr1g4473 | 223 | PANTHER | SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A | 1 | 219 | - | - | |
Tpr1g4473 | 223 | MobiDBLite | consensus disorder prediction | 124 | 223 | - | - | |
Tpr1g4473 | 223 | SMART | rrm1_1 | 45 | 118 | IPR000504 | GO:0003723 | |
Tpr1g4473 | 223 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 44 | 122 | IPR000504 | GO:0003723 | |
Tpr1g4473 | 223 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 1 | 219 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g4473 | Tpr-Chr1 | 52652570 | 52655582 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g4473 | 44 | 117 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 37.838 | 6.18e-09 | 53.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g4473 | K12900 | - | gmx:100816913 | 206.838 |