Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4455 ATGATTTATGGTAGGTGTGCAGCTTGCAAGAGTCAAAGAAGAAGGTGCCCTTCTGATTGCATTTTCTCTCCCTATTTCCCTCCCAATGATCCTCAAAAATTTGCTTCTGTTCATCGAATCTATGGTGGTAGTAATGTTGGAAAAATGCTTCAGCAATTGCCTTATTGTGTAAGAGAGCAAGCTGCAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAGATCCGGTTTATGGATGTGTTGGGATTATCTCTAAATTGTATCAACAAATCCATGAAACAGAAGTTGAGTTGGCCAAAATCCAAACTCAAATTGCTTATTATAAATTCCAAAATCAACAATTTGAAGCTGAATCCAACTTAAGTTCTTTGCCACTACCACAGGGTAACAACATGGAGATGGAGCACTTTCAATGGCCTAGTCAAGCTCTTAATTACTCCAATTGA 447 0.3758 MIYGRCAACKSQRRRCPSDCIFSPYFPPNDPQKFASVHRIYGGSNVGKMLQQLPYCVREQAANTLYLEAQCRIQDPVYGCVGIISKLYQQIHETEVELAKIQTQIAYYKFQNQQFEAESNLSSLPLPQGNNMEMEHFQWPSQALNYSN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4455 148 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Tpr1g4455 148 Coils Coil 84 104 - -
Tpr1g4455 148 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
Tpr1g4455 148 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Tpr1g4455 148 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4455 Tpr-Chr1 52398481 52399407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4455 5 106 AS2 family AT3G26660 68.627 1.69e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g4455 LOB 2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4455 - - mtr:MTR_7g028905 213.386