Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4453 ATGGGCAACAACTGCGTCGGACCAAACATCGGCGGGAATGGTGGTTTCCTTCAATCCGTTTCGGCTGCCGTATGGAAAACACGTCCACCGGAGCCAAGGCTTCCTGCACCTGACGACGACAAAGACAAAAATCAGTCTCCGGCAAATGCTGCAACAGAGTCGACTGCCACCGGAAAAGGTTCCGAAGGTTCTAATAATCCTCCCATGCCGGTTCAAAGTACGCCGCCTGAACCGGTGAAAATAGCTGCTGGAGAAGCAAAACCGCTTCCGCTTGACCATGAAAAACCCGTTAAAGCTAAACCAGAGGTAGTAAATAATCCACCACCAGCATCTAGTACTACCGGTGGCGGAGGTGGTAGTGGAGAAGCTAAGAAACCTACACATGTGAAAAGGAATTCAAGTGTTGGACTTCAGGTAGAGTATGTATTGGGTAGAAAAACAGAGAATATAAAAGAATTTTTTAGTTTGGGAAGAAAATTAGGGCAAGGGCAATTTGGGACGACATTTTTATGTATGGAGAAAGGAACTAATAAGGAATTTGCATGCAAATCAATTGCAAAGAGGAAATTAACAACACAAGAAGATGTTGAAGATGTTAGAAGAGAGATTAGGATAATGCATCACTTAGCTGGTCACCCAAATGTGATACAAATAATTGGTGCTTATGAAGATGCTGTTGCTGTTCATGTTGTTATGGAGTTATGTGCTGGCGGGGAACTTTTTGATAGGATTATACAGAGAGGGCATTATACTGAGAGAAAAGCTGCTGAACTTGCTAGGTTGATTTTAGGTGTTGTTCAAGCTTGTCATTCTTTAGGTGTTATGCATAGAGATTTGAAGCCTGAGAATTTTCTTTTTGTTAGTCATGAAGAAGAATCTCGGCTTAAGACAATTGATTTTGGACTCTCTGTGTTTTTTAGACCAGGTGAAACATTTACTGACGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCAAGAATGTGATGTTTGGAGCGCTGGAGTGATCATTTATATTTTACTCAGTGGAGTTCCTCCATTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTATTGAAAGGAGAGCTTGACTTTATTTCTGAACCATGGCCCAGCATATCTGAAAGTGCAAAGGATCTTGTTCGAAAAATGCTTGTAAGGGATCCTAAGAAGCGGTTAACGGCACATGAAGTTCTTTGCCATCCTTGGGTTCAGGTTGGTGGTGTTGCCCCTGATAAACCACTTGATTCTGCCGTCTTATCTCGTTTGAAACAATTCTCTGCAATGAACAAGCTCAAGAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCCGAGGAAGAAATTGCAGGACTGAAAGAAATGTTCAGGATGATAGACACAGATAATAGCGGACAGATTACTCTCGAGGAACTGAAAAATGGTTTAGAGAGAGTTGGTTCCGTTCTTAAGGATTCTGAAATTACCTGGTTAATGCAAGCGGCAGATGTTGATAATAGTGGTACCATAGACTATGGTGAATTTATAGCAGCTATGCTTCATCTAAACAAGATCCAGAAGGAGGATCATCTATTTGCCGCCTTTAACTACTTTGACAAAGATGGTAGTGGATACATTACAAAGGATGAGCTTCAACAAGCCTGTCAACAGTTTGGCCTACAAGAGGATCATCTAGATGATATAATACGTGAAGCTGATAAGGATAATGATGGACGCATTGACTACAGTGAATTTGTTGCAATGATGCAAGACACTGATTTTGGCAAAAAGGGGATATAA 1803 0.416 MGNNCVGPNIGGNGGFLQSVSAAVWKTRPPEPRLPAPDDDKDKNQSPANAATESTATGKGSEGSNNPPMPVQSTPPEPVKIAAGEAKPLPLDHEKPVKAKPEVVNNPPPASSTTGGGGGSGEAKKPTHVKRNSSVGLQVEYVLGRKTENIKEFFSLGRKLGQGQFGTTFLCMEKGTNKEFACKSIAKRKLTTQEDVEDVRREIRIMHHLAGHPNVIQIIGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLILGVVQACHSLGVMHRDLKPENFLFVSHEEESRLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFISEPWPSISESAKDLVRKMLVRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFRMIDTDNSGQITLEELKNGLERVGSVLKDSEITWLMQAADVDNSGTIDYGEFIAAMLHLNKIQKEDHLFAAFNYFDKDGSGYITKDELQQACQQFGLQEDHLDDIIREADKDNDGRIDYSEFVAMMQDTDFGKKGI* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4453 600 SMART serkin_6 154 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4453 600 MobiDBLite consensus disorder prediction 32 46 - -
Tpr1g4453 600 MobiDBLite consensus disorder prediction 98 131 - -
Tpr1g4453 600 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Tpr1g4453 600 CDD STKc_CAMK 153 411 - -
Tpr1g4453 600 MobiDBLite consensus disorder prediction 21 79 - -
Tpr1g4453 600 ProSiteProfiles EF-hand calcium-binding domain profile. 563 596 IPR002048 GO:0005509
Tpr1g4453 600 ProSitePatterns Protein kinases ATP-binding region signature. 160 187 IPR017441 GO:0005524
Tpr1g4453 600 Gene3D - 419 595 - -
Tpr1g4453 600 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 593 - -
Tpr1g4453 600 SUPERFAMILY Protein kinase-like (PK-like) 137 430 IPR011009 -
Tpr1g4453 600 SMART efh_1 531 559 IPR002048 GO:0005509
Tpr1g4453 600 SMART efh_1 495 523 IPR002048 GO:0005509
Tpr1g4453 600 SMART efh_1 459 487 IPR002048 GO:0005509
Tpr1g4453 600 SMART efh_1 565 593 IPR002048 GO:0005509
Tpr1g4453 600 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Tpr1g4453 600 ProSiteProfiles Protein kinase domain profile. 154 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4453 600 Pfam Protein kinase domain 155 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4453 600 MobiDBLite consensus disorder prediction 47 68 - -
Tpr1g4453 600 ProSiteProfiles EF-hand calcium-binding domain profile. 527 562 IPR002048 GO:0005509
Tpr1g4453 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Tpr1g4453 600 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Tpr1g4453 600 Gene3D Transferase(Phosphotransferase) domain 1 240 417 - -
Tpr1g4453 600 Pfam EF-hand domain pair 530 591 IPR002048 GO:0005509
Tpr1g4453 600 Pfam EF-hand domain pair 460 520 IPR002048 GO:0005509
Tpr1g4453 600 Gene3D Phosphorylase Kinase; domain 1 156 239 - -
Tpr1g4453 600 ProSitePatterns EF-hand calcium-binding domain. 574 586 IPR018247 -
Tpr1g4453 600 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Tpr1g4453 600 ProSiteProfiles EF-hand calcium-binding domain profile. 491 526 IPR002048 GO:0005509
Tpr1g4453 600 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 89 593 - -
Tpr1g4453 600 SUPERFAMILY EF-hand 451 591 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4453 Tpr-Chr1 52310859 52326067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4453 1 600 EF-hand Containing Proteins AT2G38910 73.675 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr1g4453 Pkinase 2.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4453 K13412 - gmx:100813232 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4453 1 52310859 52326067 Tpr1g4453 1 52310859 52326067 ECH
Tpr6g0650 6 5277186 5281722 Tpr1g4453 1 52310859 52326067 PCT