Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4451 ATGGATCCAAAGCAGGAGGTTCAGGCTCAGTCCGTTGAGGCCGAGCCAAAAGCCAAAGTTAAGGAAATTCTTTCCGTTCAAGATGAAGAAGATGAGCTGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGGCAAGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTTAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGACACAACAAGGTTTACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCATTTTTACCAATATCGGGGCTCATGGGTTTAAACATAAAAACTAGATTGGATAAAAGTCTTTGTTCATGGTGGGATGGACCTTGCTTATTTGAATCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTTGTTGCTATATATATCGATGAAAATCGGGTTACACTCGCTGGACCTGGTGAAAATTTACGGGTTCGATTATCTGGCGTTGAAGAAGAAGACATATTGTCTGGGTTCGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAGTTGCAGATCCTTGAATTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCATGTCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATATGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGGAAAATCACTGCTCTCTGA 1389 0.4032 MDPKQEVQAQSVEAEPKAKVKEILSVQDEEDELMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVSFLPISGLMGLNIKTRLDKSLCSWWDGPCLFESLDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVTLAGPGENLRVRLSGVEEEDILSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKITAL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4451 462 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
Tpr1g4451 462 PRINTS GTP-binding elongation factor signature 40 53 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 Gene3D Translation factors 265 350 - -
Tpr1g4451 462 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 356 461 IPR009001 -
Tpr1g4451 462 CDD eRF3_C_III 354 462 - -
Tpr1g4451 462 Gene3D Translation factors 354 462 - -
Tpr1g4451 462 CDD eRF3_II 267 348 - -
Tpr1g4451 462 Gene3D - 18 260 IPR027417 -
Tpr1g4451 462 Pfam Elongation factor Tu domain 2 280 346 IPR004161 GO:0005525
Tpr1g4451 462 PANTHER TRANSLATION FACTOR 28 456 - -
Tpr1g4451 462 Pfam Elongation factor Tu GTP binding domain 36 238 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 271 IPR027417 -
Tpr1g4451 462 Pfam Elongation factor Tu C-terminal domain 352 461 IPR004160 -
Tpr1g4451 462 SUPERFAMILY Translation proteins 260 352 IPR009000 -
Tpr1g4451 462 CDD EF1_alpha 40 260 - -
Tpr1g4451 462 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 36 265 IPR000795 GO:0003924|GO:0005525
Tpr1g4451 462 PANTHER BNAA06G12300D PROTEIN 28 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4451 Tpr-Chr1 52279360 52288521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4451 6 460 Eukaryotic Initiation Factors Gene Family AT5G10630 36.147 7.67e-97 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4451 K03267 - gmx:100793653 808.905