Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4449 ATGGAGAAAGGAAATACAATGGGGATATCTAGGACAAAATCAGATCAGCTGGTGGAGTCGATGGTGGCGGCTCTAAAGTCGCCACAATCGAGTGATCACTCGGCAAATGGAGCAGTGGAAGGGAGCGGAGGATTGTCGAGGAAGTCAAGTCGGAGGATAACTGCGGCATCGCCGGGGCACAGCGAAAGGAAGAACACACACATAAGGAAAACAAGAAGTGCTCAATTGAAGATTGATTTTGATGAGTTGGGTAGCGGCGCGGCTCTTAGCCGAGCTTCAAGTGCAAGCTTGGGTCTCTCATTTTCATTTACTGGATTCACTATGCCTCCTGATCAAATTGGTGATACAAAACCATTCAGTGACGATGATATGATTCCTGAGGATATTGAAGCAGGAATTAGGACAAAGACAAAGTTTCAAACAGAACCTACTCTGCCTATATATCTAAAGTTCACTGATGTGACCTACAAGGTAGTGCTGAAAGGCATGACATCAAGTGAAGAGAAAGACATCTTGTATGGGATAAGTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAACTCTTTTAAATCTCCTTGGAGGAAGGCTAACTCAGCACACAGTTGGTGGTTCTATCACTTACAATGACCAATCATATTCCAAGTTCCTTAAAAGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTGACTGTGAAAGAGACGTTAACATACGCAGCCCGGTTAAGACTTCCAAAGACATTCACTAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGATACTATGATTGGTGGTTCATTTGTTCGCGGAATATCTGGTGGAGAGAGGAAAAGAGTTTGTATTGGAAATGAGATCATAATCAACCCTTCTATTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCAACAACCGCGTTGAAGATTGTTCAGATGCTGCAAGACATAGCAGAGGCGGGTAAAACAGTTGTAACAACAATTCACCAACCGTCAAGTAGACTCTTCCACAAGTTTGACAAGTTGATCCTTCTTGGGAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGAATTACTTCCAATCTATAGGATGTACACCGCTTATTTCCATGAATCCAGCAGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGATGTTTCCGTACCATCAGAGTTGGAGGATAAAGTGCTAATTGGAAATGCAGAAGTTGAAAAATATAATGGAAAACCATCACCAGCAGTAGTCCATGAGTATCTGGTGGAGGCATATGAATCTCGAGTTGCGGAAACAGAGAAGAGAAAAATAATGGTTTCTGTACCTCAAGATGAAGCTTTGAAGGATAAAGTATGTCCACAAAGACAATGGGGAGCAAGGTGGGATGAGCAATTTTCCATACTTTTTTGGAGAGGAATCAAAGAAAGGAGGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGACTCCTTTTCTTCATTGCTGTGTTCTGGGGATTCTTTCCGGTTTTTACTGCAATATTTACATTTCCTCAAGAGAGAGCCATGTTGAATAAAGAACGCGCAGCAGATATGTACAGATTAAGCGCATACTTCCTTGCTAGAACTACAAGTGACCTTCCATTAGACCTGATATTACCGGTGCTTTTTCTCCTCGTTGTTTACTTCATGGCTGGTCTGAGACTAAGCACTGCCCCCTTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATCATTGCAGCTCAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGACTTGAAAAGAGCAACAACTCTAGCTTCGGTAACTGTGATGACCTTCATGCTTGCTGGAGGATTTTTTGTCCAGAAAGTACCAATATTCATTTCATGGATACGCTACATGTCTTTCAACTACCACACTTACAAGCTGTTGCTCAAAGTGCAATATGAACATCTCACACCTGTCATAAATGGAGTCAAAATTGACAGTGGTTTGACAGAAGTAGCTGCACTGATTGCCATGGTTTTCGGTTACCGTTTCTTGGCATATCTTTCGTTGCGGCGAATGAAACTTCAATAG 2226 0.4223 MEKGNTMGISRTKSDQLVESMVAALKSPQSSDHSANGAVEGSGGLSRKSSRRITAASPGHSERKNTHIRKTRSAQLKIDFDELGSGAALSRASSASLGLSFSFTGFTMPPDQIGDTKPFSDDDMIPEDIEAGIRTKTKFQTEPTLPIYLKFTDVTYKVVLKGMTSSEEKDILYGISGSVNPGEVLALMGPSGSGKTTLLNLLGGRLTQHTVGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCTPLISMNPAEFLLDLANGNINDVSVPSELEDKVLIGNAEVEKYNGKPSPAVVHEYLVEAYESRVAETEKRKIMVSVPQDEALKDKVCPQRQWGARWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSTAPFFLTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPVINGVKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQ* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4449 741 ProSitePatterns ABC transporters family signature. 295 309 IPR017871 GO:0005524
Tpr1g4449 741 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 11 738 - -
Tpr1g4449 741 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 738 - -
Tpr1g4449 741 MobiDBLite consensus disorder prediction 7 37 - -
Tpr1g4449 741 CDD ABCG_EPDR 146 377 - -
Tpr1g4449 741 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 149 395 IPR003439 GO:0005524
Tpr1g4449 741 Gene3D - 148 390 IPR027417 -
Tpr1g4449 741 Pfam ABC-2 type transporter 489 698 IPR013525 GO:0016020|GO:0140359
Tpr1g4449 741 Pfam ABC transporter 174 323 IPR003439 GO:0005524
Tpr1g4449 741 Pfam ABC-2 type transporter 352 422 IPR043926 GO:0140359
Tpr1g4449 741 MobiDBLite consensus disorder prediction 47 61 - -
Tpr1g4449 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 388 IPR027417 -
Tpr1g4449 741 SMART AAA_5 181 372 IPR003593 -
Tpr1g4449 741 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4449 Tpr-Chr1 52234328 52245976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4449 147 409 Calmodulin-binding Proteins AT2G36910 28.253 7.32e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4449 K05681 - gmx:100798801 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4449 1 52234328 52245976 Tpr1g4449 1 52234328 52245976 ECH
Tpr6g0640 6 5220562 5227582 Tpr1g4449 1 52234328 52245976 PCT