Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4439 ATGGGAAACCACTGTGTTGGAAGGAGAAGAACCTCACGTTCAATAGATGAACCATCACACTCAAAACTTCCAACTCTATCTTGCTGGTCACGTGTAACCAAGAAAGATCATTTACACAAAACCAATCCAACAAATGCTACAGAAATTGTTCAAAACCGGCCCCCGGAGGTAGTGAAAATTGAAACGGACGATGTAAAACCACCAAAACCACAACAAAAATCACAAACGAGTCAAGTTTCTGTTGCTGTTTCTTCTACACATTCAAAGCATAAGAGACCTCACAATGTGAAGAGAGTAGTGAGTGCAGGGCTAAAAACAGATTCAGTTTTACAGCGAAAAACGGTTAATCTTAGAGAGTTTTATAATTTGGGACCAAAGCTTGGACAAGGGCAATTTGGAACTACGTTTCTTTGCGTAGAGAAAGCTACTGGAAAAGAGTATGCATGTAAATCAATCATGAAGAGGAAATTGTTGACAGAAGAGGATGTTGAAGATGTGAGGAGGGAGATTCAGATTATGCATCACTTGGCTGGGTGTCCGAATTTGATTTCAATTAAGGAAGCTTCCGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCCGGTGGTGAACTTTTTGATAGGATTGTGGAAAGAGGGCATTATACAGAAAGAAAAGCAGCTAAACTTGCAAGGACTATTGTTGGTGTAATTCAGTCATGTCATGCTCTTGGTGTAATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAACAGGAAGATTCTCCTCTTAAGGCTATAGATTTTGGACTATCTGCTTTTTTTAAACCAGGTGACATTTTCAATGATGTAGTAGGAAGTCCTTACTATGTTGCACCGGAAGTTTTACGCAAGCGATATGGCCCGGAAGCAGATGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCCATTTTGAATAGTGAACTTGATTTCTCATCAGATCCATGGCCTAGTGTCTCCGACAGTGCAAAAGACTTGGTTATGAGGATGCTTGTCAGAGACCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGCCATCCCTGGATGGTGGACGGAGCAGCTCCTGACAAGCCTCTTGATTCTGCAGTTTTAAGCCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCTGAAGACGAAATTGCTGGATTGAAAGAAATGTTTAAGATGATCGACACTGACAATAGTGGTCAGATTTCTTTTGAAGAACTCAAGATCGGACTGAAAAAATTTGGTGCCAATCTCAATGAATCTGAAATTTATGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGTACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAAGTTGAGAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAGTGGATTTATCACTAAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCCTAGGGAATGTCCCCTTGGAGGAAATGATCCGAGATGCTGATCAAAATAATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGGAATGCAGAAAGGAGGGGTCGAAAGGGTAGCAGTACTAGTTTTAGAATTGGATTTAGGGAGGCATTACCAAACTGCAACTATAAATAG 1764 0.4059 MGNHCVGRRRTSRSIDEPSHSKLPTLSCWSRVTKKDHLHKTNPTNATEIVQNRPPEVVKIETDDVKPPKPQQKSQTSQVSVAVSSTHSKHKRPHNVKRVVSAGLKTDSVLQRKTVNLREFYNLGPKLGQGQFGTTFLCVEKATGKEYACKSIMKRKLLTEEDVEDVRREIQIMHHLAGCPNLISIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHALGVMHRDLKPENFLFVNQQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILNSELDFSSDPWPSVSDSAKDLVMRMLVRDPSKRLSAFDVLRHPWMVDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEDEIAGLKEMFKMIDTDNSGQISFEELKIGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVEREDHLVAAFSYFDKDGSGFITKDELQKACEEFGLGNVPLEEMIRDADQNNDGRIDYNEFVAMMQRGNAERRGRKGSSTSFRIGFREALPNCNYK* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4439 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 569 - -
Tpr1g4439 587 ProSiteProfiles EF-hand calcium-binding domain profile. 493 528 IPR002048 GO:0005509
Tpr1g4439 587 PANTHER CALCIUM-DEPENDENT KINASE 64 569 - -
Tpr1g4439 587 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g4439 587 Pfam Protein kinase domain 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4439 587 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Tpr1g4439 587 Gene3D Phosphorylase Kinase; domain 1 124 206 - -
Tpr1g4439 587 Gene3D - 403 562 - -
Tpr1g4439 587 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Tpr1g4439 587 ProSitePatterns EF-hand calcium-binding domain. 540 552 IPR018247 -
Tpr1g4439 587 CDD EFh 497 557 IPR002048 GO:0005509
Tpr1g4439 587 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Tpr1g4439 587 Gene3D Transferase(Phosphotransferase) domain 1 207 402 - -
Tpr1g4439 587 Pfam EF-hand domain pair 426 486 IPR002048 GO:0005509
Tpr1g4439 587 Pfam EF-hand domain pair 497 557 IPR002048 GO:0005509
Tpr1g4439 587 SMART serkin_6 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4439 587 ProSitePatterns Protein kinases ATP-binding region signature. 127 154 IPR017441 GO:0005524
Tpr1g4439 587 SUPERFAMILY Protein kinase-like (PK-like) 120 399 IPR011009 -
Tpr1g4439 587 SUPERFAMILY EF-hand 417 558 IPR011992 -
Tpr1g4439 587 CDD STKc_CAMK 120 378 - -
Tpr1g4439 587 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Tpr1g4439 587 MobiDBLite consensus disorder prediction 69 86 - -
Tpr1g4439 587 MobiDBLite consensus disorder prediction 62 97 - -
Tpr1g4439 587 SMART efh_1 531 559 IPR002048 GO:0005509
Tpr1g4439 587 SMART efh_1 425 453 IPR002048 GO:0005509
Tpr1g4439 587 SMART efh_1 461 489 IPR002048 GO:0005509
Tpr1g4439 587 SMART efh_1 497 525 IPR002048 GO:0005509
Tpr1g4439 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Tpr1g4439 587 ProSiteProfiles EF-hand calcium-binding domain profile. 532 562 IPR002048 GO:0005509
Tpr1g4439 587 ProSiteProfiles Protein kinase domain profile. 121 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g4439 587 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Tpr1g4439 587 CDD EFh 426 485 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4439 Tpr-Chr1 52104471 52109212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4439 55 560 EF-hand Containing Proteins AT3G10660 75.542 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tpr1g4439 Pkinase 1.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4439 K13412 - gmx:100800415 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4439 1 52104471 52109212 Tpr6g0650 6 5277186 5281722 PCT