Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g4432 ATGGTGGAAACAACCGCCGTTAAGAGACCCTGTCATTCACTTCACACGCCACAGCCGCCGACCTATCTTCCTTACGATGTCATAGAAGAAGAAATCTTGTGTCGACTCCCTGTCAAGCTCCTTCGACAATTATGCTGCGTATGTAAGTCATGGAATACTCTGATCTCAAAGAATCTCAAATTCGCCAAAAAACATCTTCGCATGTCAACCAAAAACCGCTACCTCATAACAACCCGCCGTTGGCGCGGCTCGAAAGAGTTAACTATAAACTCTTATCCACTCGATTCCATTCCATTCCACTCTATCTTAACCTCTAATGGCACACAACTCGATTACCCTGAGTACATTAGTCAACGTTATCTCCGGCACGGTCTCGTTGATTCTTGCGACGGTCTCCTTTGTTTCCTCATCAATGACCATCTTGTTCATATCTATAACCCTTGCCTCAGAAAAGTGAAGGAATTACCCTATCTTGATTTTCCACATTTTTTAACAGATTGTCGATATGCTTTTGGCTATGATCCTTTCATTGATAATTACAAGGTTATTGCTGTTTTAAGTTATGTTGTGCCAGAGAAAGACCAAGTCTGCAAAGGTAGTGAAGTTAAAGTTTATACTTTGGGCACCGACTCTTGGAAAAAGATTAAGGACTTCCCTTCTTCTAAGGCTCCTCATGGCAGACGGGGAATATTCGTGAATGGCACGGTTAATTGGTTGACATACGACGATAATTCAAAGAATTTGACTGGCATTGTTTCTCTTCATTTGGGAAGTGAATCTTATCAAGAAATACCACTGCCAGATTATAAAGTAAATTTTAATACTTTGACCTTGGATGTGATGAGGGATTGCTTGTGCATATTTTCTCAAAAAAGTGTTGAATCTTTTATTGATGTTTGGCTTATGAAGGAATACTACGTTAATAAAGATTCTTGGGTTAAATTGATTAGTGTTCCTCACATTGGTGATTCTGGTTACTTTTCTCACCTTGGTGGTTCTGGTTACTTTTTTACCAAGATACTGGATATTTCCGAGGACGACAACCAAGTGCTGCTTGTCTTTAAAGAGCTTGATAAATTGAAGTGGGTTGTTTATGATTGCAAAAATAAAACTCCAGTGAGTTCCAAGATTGAAGATTTCTGTTGGGTAGAATCAAACGTCTATGTTGAAAGTTTGATATCACCATAA 1188 0.3923 MVETTAVKRPCHSLHTPQPPTYLPYDVIEEEILCRLPVKLLRQLCCVCKSWNTLISKNLKFAKKHLRMSTKNRYLITTRRWRGSKELTINSYPLDSIPFHSILTSNGTQLDYPEYISQRYLRHGLVDSCDGLLCFLINDHLVHIYNPCLRKVKELPYLDFPHFLTDCRYAFGYDPFIDNYKVIAVLSYVVPEKDQVCKGSEVKVYTLGTDSWKKIKDFPSSKAPHGRRGIFVNGTVNWLTYDDNSKNLTGIVSLHLGSESYQEIPLPDYKVNFNTLTLDVMRDCLCIFSQKSVESFIDVWLMKEYYVNKDSWVKLISVPHIGDSGYFSHLGGSGYFFTKILDISEDDNQVLLVFKELDKLKWVVYDCKNKTPVSSKIEDFCWVESNVYVESLISP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g4432 395 PANTHER PROTEIN, PUTATIVE-RELATED 20 377 - -
Tpr1g4432 395 SMART fbox_2 23 64 IPR001810 GO:0005515
Tpr1g4432 395 TIGRFAM F_box_assoc_1: F-box protein interaction domain 127 369 IPR017451 -
Tpr1g4432 395 Gene3D - 20 74 - -
Tpr1g4432 395 PANTHER OS02G0783600 PROTEIN 20 377 - -
Tpr1g4432 395 SUPERFAMILY F-box domain 15 79 IPR036047 GO:0005515
Tpr1g4432 395 Pfam F-box associated 229 360 IPR006527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g4432 Tpr-Chr1 52030002 52031492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g4432 201 327 Carbohydrate Esterase AT1G25141 24.444 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g4432 - - mtr:MTR_7g007300 395.201